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RGLab / flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools
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gs_pop_add() function referenced in vignette #27

Closed jeremycfd closed 5 years ago

jeremycfd commented 5 years ago

Hello,

You utilize a function called gs_pop_add() in your vignette, but I've been unable to locate this function in any current R package. I got the sense that this may have been replaced by the add() function in the flowWorkspace package, but replacing gs_pop_add(gs, lg) with add(gs, lg) in your vignette doesn't work.

Thanks!

mikejiang commented 5 years ago

add is deprecated by gs_pop_add in the latest bioc development or github trunk branch. Both are defined in flowWorkspace so check your package version of flowWorkspace

jeremycfd commented 5 years ago

Ah, thanks. Turns out the github installation of most recent version of flowWorkspace was failing because I also needed to install RProtoBufLib, cytolib, flowCore, ncdfFlow, and flowStats from github repo as well (versions from Bioc were causing problems).

Thanks!