x0marks argument is no longer optional, it is supposed to be a vector of times of landmarks for target curve. Now I manually set it to the mean of the landmark times in ximarks (the input data) based on the recommendation of doc
Test shows normalization behaves as expected
gs <- normalize(gs, populations=c("CD4+CD8-CD69"),dims=c("CD69"), minCountThreshold = 50)
Estimating landmarks for channel CD69 ...
Registering curves for parameter CD69
The latest
fda::landmarkregapi change breaksflowStat::warpSetfunction, therefore failed bioconductor package buildmonwrdargument (used to switch on and off the monotonic smoothing flag) is no longer supported, now it has to be strictly monotonic by default (https://cran.r-project.org/web/packages/fda/news.html)x0marksargument is no longer optional, it is supposed to be a vector of times of landmarks for target curve. Now I manually set it to the mean of the landmark times in ximarks (the input data) based on the recommendation of docTest shows normalization behaves as expected