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RGLab / flowStats

flowStats: algorithms for flow cytometry data analysis using BioConductor tools
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Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘normalize’ for signature ‘"GatingSet"’ #52

Open danli349 opened 7 months ago

danli349 commented 7 months ago

Hello :

Which package does normalize come from? 

###################################################
### code chunk number 7: quad_gate_norm
###################################################
gs <- normalize(gs, populations=c("CD4+CD8+", "CD4+CD8-", "CD4-CD8+", "CD4-CD8-"), 
                     dims=c("CD4", "CD8"), minCountThreshold = 50)
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘normalize’ for signature ‘"GatingSet"’
gfinak commented 7 months ago

I believe that's a deprecated method, and no longer supported.