faile to compile

[akhst7]

Trying to install FWS in my school's cluster but falling to install with a following error message;

R/3.x/RProtoBufLib/lib/GatingSet.pb.o: No such file or directory
make: *** [flowWorkspace.so] Error 1
ERROR: compilation failed for package ‘flowWorkspace’

sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.6 (Santiago)

Matrix products: default BLAS: /ihome/sam/apps/R/3.5.1/gcc5.2.0/lib64/R/lib/libRblas.so LAPACK: /ihome/sam/apps/R/3.5.1/gcc5.2.0/lib64/R/lib/libRlapack.so

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] ggplot2_3.0.0.9000 data.table_1.11.5 devtools_1.13.6 [4] BiocInstaller_1.30.0

loaded via a namespace (and not attached): [1] Rcpp_0.12.18 bindr_0.1.1 magrittr_1.5 tidyselect_0.2.4 [5] munsell_0.5.0 colorspace_1.3-2 R6_2.2.2 rlang_0.2.1 [9] plyr_1.8.4 dplyr_0.7.6 tools_3.5.1 grid_3.5.1 [13] gtable_0.2.0 withr_2.1.2 lazyeval_0.2.1 digest_0.6.15 [17] assertthat_0.2.0 tibble_1.4.2 crayon_1.3.4 bindrcpp_0.2.2 [21] purrr_0.2.5 memoise_1.1.0 glue_1.3.0 compiler_3.5.1 [25] pillar_1.3.0 scales_0.5.0 pkgconfig_2.0.1

lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: RedHatEnterpriseServer Description: Red Hat Enterprise Linux Server release 6.6 (Santiago) Release: 6.6 Codename: Santiago

[gfinak]

You might need to install the RProtoBuf package. https://cran.r-project.org/web/packages/RProtoBuf/index.html I don't see it in your session info. But it should get installed as a dependency.

[mikejiang]

check the current version of RProtoBufLib ( by packageVersion("RProtoBufLib") ), if it is the latest, remove it and install the latest 1.2.0

[akhst7]

After installing the RProtoBuf package, FlowWorspace complied successfully in the cluster.

Thanks !!