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RGLab / flowWorkspace

flowWorkspace
GNU Affero General Public License v3.0
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installation of flowWorkspace failed #254

Closed staedlern closed 6 years ago

staedlern commented 6 years ago

Hi,

I tried to install flowWorkspace via

source("https://bioconductor.org/biocLite.R"); biocLite("flowWorkspace")

Unfortunately installation failed with error message:

R inst preparing package for lazy loading help * installing help indices building package indices installing vignettes testing if installed package can be loaded Error: package or namespace load failed for ‘flowWorkspace’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/pstore/home/staedlen/R/x86_64-pc-linux-gnu-library/3.4/flowWorkspace/libs/flowWorkspace.so': /pstore/home/staedlen/R/x86_64-pc-linux-gnu-library/3.4/flowWorkspace/libs/flowWorkspace.so: undefined symbol: _ZN5boost16re_detail_10660014verify_optionsEjNS_15regex_constants12_match_flagsE Error: loading failed Execution halted

It would be great if you could help me!

Thanks a lot,

Nicolas

gfinak commented 6 years ago

Start by updating your R version to 3.5.1, which is the current release.

gfinak commented 6 years ago

A bit more info: the precompiled binary you're installing for version 3.4 is looking for the boost library, (and for whatever reason can't resolve those symbols on your system). The current version of flowWorkspace no longer uses boost.

staedlern commented 6 years ago

Hi Greg

Thanks a lot. All good now.

Best wishes,

Nicolas