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RGLab / flowWorkspace

flowWorkspace
GNU Affero General Public License v3.0
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flowWorkspace Binary on BioC devel #306

Closed DillonHammill closed 4 years ago

DillonHammill commented 4 years ago

@mikejiang, is it possible to have a flowWorkspace binary on BioC devel? Looks like we can only install from source at the moment?

mikejiang commented 4 years ago

It is because flowCore failed to compile on bioc with the same error that @hally166 had. I will track it down and provide the fix.

DillonHammill commented 4 years ago

Thanks @mikejiang. Sorry for bothering you so much. I will just need the devel versions until I have patched all the issues causes by the recent API changes. Once this is stable and on BioC release there shouldn't be any issues. It is just in the interim that I need to have users install the devel versions.

mikejiang commented 4 years ago

See https://github.com/RGLab/flowCore/issues/175#issuecomment-595868129 I will push to the bioc devel, which should make the binaries available tomorrow for all the related packages.

DillonHammill commented 4 years ago

Thanks @mikejiang. Really appreciate it. I will try a fresh install tomorrow.

DillonHammill commented 4 years ago

Although the flowWorkspace binary is now available, we still need to compile the flowClust dependency for openCyto as a binary is not available https://github.com/RGLab/flowClust/issues/20. I haven't had much luck compiling flowClust from source.

mikejiang commented 4 years ago

The latest devel version is 3.35.12, which has not been built yet, but should appear later today or tomorrow.