I am having some trouble getting flowWorkspace to work on a linux VM.
I have successfully installed all the required packages (e.g. cytolib, flowCore, flowWorkspace, openCyto etc) - I have tried using multiple compilers (e.g. intel compiler 2021.2.1, intel mkl 2021.2.0, intel tbb 2021.2.0 and gcc 11.1.0) but I always get a memory not mapped segfault error.
For example if I try to load in some FCS files using load_cytoset_from_fcs():
Hi @mikejiang,
I am having some trouble getting
flowWorkspace
to work on a linux VM.I have successfully installed all the required packages (e.g. cytolib, flowCore, flowWorkspace, openCyto etc) - I have tried using multiple compilers (e.g. intel compiler 2021.2.1, intel mkl 2021.2.0, intel tbb 2021.2.0 and gcc 11.1.0) but I always get a memory not mapped segfault error.
For example if I try to load in some FCS files using
load_cytoset_from_fcs()
:Here is my
sessionInfo
:Not sure if I have done something wrong during compilation? Are there a specific set of compilers that I should use?