Closed DarioS closed 1 year ago
Make sure RProtoBufLib
and cytolib
are installed properly via BiocManager::install,
Thanks for the suggestion. They were previously installed and are at the latest release versions. Any other checks I should do?
> library(cytolib)
> library(RProtoBufLib)
> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 11 (bullseye)
other attached packages:
[1] RProtoBufLib_2.8.0 cytolib_2.8.0
Could you please paste or attach the entire output of biocManager::install("flowWorkspace")?
I could.
> .libPaths("/tmp/testInstall") # Empty directory.
> install.packages("BiocManager") # Installs version 1.30.18 of BiocManager.
> logLines <- system2("Rscript", "-e \".libPaths('/tmp/testInstall/');BiocManager::install('flowWorkspace');\"", stdout = TRUE, stderr = TRUE)
> writeLines(logLines, "installation.txt")
The log of installation is attached.
skip .libPaths("/tmp/testInstall")
, and run BiocManager::install(c('RProtoBufLib', 'cytolib', 'flowWorkspace');
then reattach the log
Never mind. One of the package installations was failing because it was looking for TMPDIR
that is on another server.
There is a problem with compiled code.
I am installing onto a Debian 11 departmental server.