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RGLab / openCyto

A package that provides data analysis pipeline for flow cytometry.
GNU Affero General Public License v3.0
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How to get gated-area #149

Closed kdh4win4 closed 7 years ago

kdh4win4 commented 7 years ago

Dear Mike and Finak,

Can I know how to get gated area as a value in R or csv file which include all cell's information in the alias which alias name is "CD16pos"? Thank you for your time.

mikejiang commented 7 years ago

look at ?getData

kdh4win4 commented 7 years ago

Thank you very much, Mike. I would like to get each individual cell's marker information for the further analysis. For example, 

cell_#          CD16        CD56      KIR        AQUA        FSC        SSC
40000023       400.34     12.12       0.3        100000     10000    10000
.              .             .            .            .           .            .
.              .             .            .            .           .            .
.              .             .            .            .           .            .

Can I get to know this step ? Thank you for your time.

mikejiang commented 7 years ago

exprs(getData(gs[[1]], "CD16Pos")), this gives you the matrix with column names of channel, you will have to replace channel with marker by your self

kdh4win4 commented 7 years ago

That's great, I appreciate it, Mike.