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RIVM-bioinformatics / AmpliGone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
https://rivm-bioinformatics.github.io/AmpliGone/
GNU Affero General Public License v3.0
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Give an option to exit cleanly when empty input is given #12

Closed florianzwagemaker closed 2 years ago

florianzwagemaker commented 2 years ago

Currently, AmpliGone is unable to exit cleanly when an empty input file is given.

There should be two changes: a) AmpliGone should exit cleanly if an empty input fastq is given. b) There needs to be an extra flag to create empty outputs (for workflows/pipelines) if an empty input is given