chore: release 0.4.0 - Githubissues

RIVM-bioinformatics / TrueConsense

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

https://rivm-bioinformatics.github.io/TrueConsense/

GNU Affero General Public License v3.0

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chore: release 0.4.0 #12

Closed github-actions[bot] closed 2 years ago

github-actions[bot] commented 2 years ago

:robot: I have created a release beep boop

0.4.0 (2022-04-14)

⚠ BREAKING CHANGES

Use only a single minimum coverage level

Features

Use only a single minimum coverage level (cdd29b7)

Bug Fixes

Fix WriteOutputs number of args (8bf72f8)

Performance Improvements

Use pysam directly in stead of pysamstats (afd8c0a)

Dependencies

remove parmap as a dependency (0aaed4d)

Documentation

add docstring to TrueConsense.Outputs (4855ee9)
add docstrings to functions in TrueConsense.Ambig (4e8a138)
add docstrings to functions in TrueConsense.Coverage (47d8c89)
add docstrings to functions in TrueConsense.Events (6d754e3)
add docstrings to functions in TrueConsense.indexing (650a5d1)
add docstrings to functions in TrueConsense.Sequences (5abdb81)
add docstrings to functions of TrueConsense.ORFs (b52a750)
update readme and docs-index to support a single coverage level (f9fd73e)
update TrueConsense docs to only feature a single coverage level (53cecc3)

This PR was generated with Release Please. See documentation.

github-actions[bot] commented 2 years ago

:robot: Release is at https://github.com/RIVM-bioinformatics/TrueConsense/releases/tag/v0.4.0 :sunflower: