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RIVM-bioinformatics / ViroConstrictor

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
https://rivm-bioinformatics.github.io/ViroConstrictor/
GNU Affero General Public License v3.0
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refactor: amplicon_covs.py #109

Open raaijmag opened 1 month ago

raaijmag commented 1 month ago

refactor: ViroConstrictor.workflow.scripts.amplicon_covs.py - completely re-wrote the script from scratch refactor: ViroConstrictor.workflow.scripts.amplicon_arg_parser.py - moved argument parsing logic from amplicon_covs to a different file refactor: ViroConstrictor.workflow.scripts.init.py - added to import the argument parser to amplicon_covs.py

sonarcloud[bot] commented 1 month ago

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

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