Hi, I'm trying to run PERF on a file using this command:
PERF -i coral-sequences/0_0_coral-sequences.fastq --format fastq -a -u info/repeat_units.txt -s 300
but I have the following error:
Traceback (most recent call last):
File "/staging/leuven/stg_00026/Softwares/miniconda3/bin/PERF", line 8, in <module>
sys.exit(main())
File "/staging/leuven/stg_00026/Softwares/miniconda3/lib/python3.8/site-packages/PERF/core.py", line 146, in main
ssr_native(args, unit_cutoff=unit_cutoff)
File "/staging/leuven/stg_00026/Softwares/miniconda3/lib/python3.8/site-packages/PERF/core.py", line 97, in ssr_native
repeats_info = build_rep_set(repeat_file, unit_cutoff=unit_cutoff)
File "/staging/leuven/stg_00026/Softwares/miniconda3/lib/python3.8/site-packages/PERF/rep_utils.py", line 112, in build_rep_set
motif = motif*unit_cutoff[motif_length]
KeyError: 1
My repeats_units.txt file looks like this:
2 10
3 7
4 4
5 4
Do you have any idea from where the error is coming?
Hi Enorya. We have fixed this issue and updated the repository with a new version number 0.4.6.
Please install the new version and try running again. Let us know if you have any issue.
Hi, I'm trying to run PERF on a file using this command:
but I have the following error:
My repeats_units.txt file looks like this:
Do you have any idea from where the error is coming?