The RUV-III with PRPS Vignette for non-TCGA RNA-seq data

[zy8281263]

Hi RMolania! Thanks for the very useful approach. I want to use RUV-III with PRPS for non-TCGA RNA-seq data, but I don't know how to process the non-TCGA RNA-seq data to use RUV-III with PRPS. Would you provide a Vignette for non-TCGA RNA-seq data?

Best, Yuan

[RMolania]

Hi Yuan, Thank you for showing interest in our approach. We are currently in the final stages of preparing an R package for RUV-III-PRPS, and we encourage you to stay updated for its release. This package will offer seamless usability with any expression data, making it highly versatile and accessible. All the best, Ramyar

[zy8281263]

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[zy8281263]

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[kai0511]

Hi Yuan, Thank you for showing interest in our approach. We are currently in the final stages of preparing an R package for RUV-III-PRPS, and we encourage you to stay updated for its release. This package will offer seamless usability with any expression data, making it highly versatile and accessible. All the best, Ramyar

Hi, Ramyar, when will the package for RUV-III-PRPS be released? I am looking at the vignettes of the repository to know how to use it, but it seems less intuitive to me.

An another question, if I am not intended to remove variation of tumor purity, can I still use the tool for TCGA?

Thanks!

Kai

[EzequielD-86]

Agreed, this packages seems like it is exactly what I need for patient dataset, a vignette for non TCGA data would be greatly appreciated!

[zy8281263]

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