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RNA-FRETools / MASH-FRET

MATLAB package to analyze single-molecule FRET data
https://rna-fretools.github.io/MASH-FRET/
GNU General Public License v3.0
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More than three states causes multiple errors when trying to export #100

Closed snguyen49 closed 1 year ago

snguyen49 commented 1 year ago

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mca-sh commented 1 year ago

Hello Sidney and thank you for the bug report. It seems the error comes from some parameters of the noise model that are ill-defined and it should be handled by the software: I need to correct this. Could you please report a screenshot of the "Video parameters" panel? You apparently chose the "Nexp-N" noise model.

snguyen49 commented 1 year ago

Hi Melodie,

I usually keep everything the same in the video parameters panel except for the amount of traces and noise model. I use the Nexp-N noise model and I change the number of traces 1000 instead of the defaulted 4000. [cid:aa526a0e-7c90-450c-a286-e4358861ade7]

Many Thanks, Sydney Nguyen

From: Mélodie Hadzic @.> Sent: Saturday, August 26, 2023 4:29 AM To: RNA-FRETools/MASH-FRET @.> Cc: Sydney Huynh Nguyen @.>; Author @.> Subject: Re: [RNA-FRETools/MASH-FRET] More than three states causes multiple errors when trying to export (Issue #100)

Hello Sidney and thank you for the bug report. It seems the error comes from some parameters of the noise model that are ill-defined and it should be handled by the software: I need to correct this. Could you please report a screenshot of the "Video parameters" panel? You apparently chose the "Nexp-N" noise model.

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mca-sh commented 1 year ago

I was finally able to reproduce and fix the bug. Thank you very much for your contribution! You can find the corrected version here: https://github.com/RNA-FRETools/MASH-FRET/archive/refs/heads/master.zip (or just git pull if you are using git)

Mélodie

snguyen49 commented 1 year ago

Thank you so much!

Many Thanks, Sydney Nguyen

From: Mélodie Hadzic @.> Sent: Tuesday, August 29, 2023 1:20 PM To: RNA-FRETools/MASH-FRET @.> Cc: Sydney Huynh Nguyen @.>; Author @.> Subject: Re: [RNA-FRETools/MASH-FRET] More than three states causes multiple errors when trying to export (Issue #100)

I was finally able to reproduce and fix the bug. Thank you very much for your contribution! You can find the corrected version here: https://github.com/RNA-FRETools/MASH-FRET/archive/refs/heads/master.zip (or just git pull if you are using git)

Mélodie

— Reply to this email directly, view it on GitHubhttps://github.com/RNA-FRETools/MASH-FRET/issues/100#issuecomment-1697849909, or unsubscribehttps://github.com/notifications/unsubscribe-auth/BCCRYBGZJZU6HOQCT3YLPOTXXYQFRANCNFSM6AAAAAA363245Q. You are receiving this because you authored the thread.Message ID: @.***>

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