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RNA-FRETools / MASH-FRET

MATLAB package to analyze single-molecule FRET data
https://rna-fretools.github.io/MASH-FRET/
GNU General Public License v3.0
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Exporting traces to text files without FRET gives an error #133

Closed ckjohnson517 closed 5 months ago

ckjohnson517 commented 5 months ago

Describe the bug A clear and concise description of what the bug is. Cannot export traces (with no FRET calculation) as text file. This seems to be the same error described in bug report: Export traces #89. I downloaded the latest version of MASH-FRET, but the error still occurs.

To Reproduce Steps to reproduce the behavior:

  1. Go to 'Trace Processing'
  2. Click on 'EXPORT.'
  3. Scroll down to 'Export Time Traces'. Other exports deselected.
  4. See error

Error Code Copy and Paste the full error code in Matlabs command history. An error occurred during processing of molecule n:°1: Index in position 1 exceeds array bounds. function: saveProcAscii, line: 320 function: pushbutton_next_Callback, line: 51

Expected behavior A clear and concise description of what you expected to happen. Text files downloaded to selected directory.

Screenshots If applicable, add screenshots to help explain your problem.

Project file(s) If applicable, attatch the .mash files concerned by the bug. Github does not accept .mash file attachments.

Desktop (please complete the following information):

Additional context Add any other context about the problem here.

Your contact Leave your email address. ckjohnson@ku.edu

mca-sh commented 5 months ago

Hello and thank you for reporting this bug,

Indeed this is the same bug, but the fix is apparently not appropriate to your case. To fix the problem I will need your .mash file (please, send it to melodiehadzic@protonmail.com) and a few other things:

Best, Mélodie

mca-sh commented 5 months ago

Hello Carey and thank you for the email,

I had a different bug when opening your project, and after fixing it, it works fine for me. Could you please have a look if it works also for you with the new version: https://github.com/RNA-FRETools/MASH-FRET/archive/refs/heads/master.zip

Best, Mélodie

ckjohnson517 commented 5 months ago

Hello Mélodie,

Yes, that works! Thank you so much for your help.

With best regards, Carey

From: Mélodie Hadzic @.> Sent: Sunday, May 12, 2024 10:33 AM To: RNA-FRETools/MASH-FRET @.> Cc: Johnson, Carey K. @.>; Author @.> Subject: Re: [RNA-FRETools/MASH-FRET] Exporting traces to text files without FRET gives an error (Issue #133)

Hello Carey and thank you for the email,

I had a different bug when opening your project, and after fixing it, it works fine for me. Could you please have a look if it works also for you with the new version: https://github.com/RNA-FRETools/MASH-FRET/archive/refs/heads/master.zip

Best, Mélodie

- Reply to this email directly, view it on GitHubhttps://github.com/RNA-FRETools/MASH-FRET/issues/133#issuecomment-2106291994, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AUM6ZCOGHV3TF3STPDNPRULZB6DS3AVCNFSM6AAAAABHNV7H5SVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMBWGI4TCOJZGQ. You are receiving this because you authored the thread.Message ID: @.***>

mca-sh commented 5 months ago

Hello Carey, and thank you for helping developing MASH. I will close the issue now, do not hesitate to post a new one if you encounter another problem.

Best, Mélodie