correct dwell time calculations when using ALEX data
Histogram analysis
State configuration
fix error occurring when exporting a one-state model to the Threshold panel
Improvements
Tools
modify GUI to add a "Tools" menu in the menu bar that allows quick access to external functionalities "Restructure ASCII files", "Bin trajectories" and "Check toolbox dependencies"
Trace processing
Find states
modify GUI to add the "deblurr" parameter in panel Find states
change parameter structure in TP for panel Find states to add a 7th parameter (used in new method "Remove blurr states") and manage down compatibility
Export
adjust exported logs and panel update to new "Remove blurr states" method
Histogram analysis
Histogram and plot
modify GUI to add the "subgroup" popupmenu in panel Histogram and plot
adapt histogram plot and GUI update to empty histogram (empty molecule subgroups)
Export
adjust exported file name to new "Subgroup selection" functionality
Transition analysis
Transition density plot
make available in the GUI the option to re-arrange state sequences instead of a dialogue box popping up every time the TDP is updated
modify GUI to add the "tag" popupmenu in panel Transition density plot
change data structure for new "Subgroup selection" functionality
Export
adjust exported file name to new "Subgroup selection" functionality
New functionalities
Remove blurr states is used on state sequences, to ignore states that dwell only for one time bin. This allows to prevent the detection of blurr states, especially when using vbFRET.
Subgroup selection allows to visualize and analyze particular molecule subgroups in modules Histogram analysis and Transition analysis. Molecule subgroups are defined by the tags created and applied in the Trace manager of module Trace processing.
Here is a release note:
Fixed bugs
Transition analysis
Transition density plot
State transition rates
Histogram analysis
State configuration
Improvements
Tools
Trace processing
Find states
Export
Histogram analysis
Histogram and plot
Export
Transition analysis
Transition density plot
Export
New functionalities
Remove blurr states is used on state sequences, to ignore states that dwell only for one time bin. This allows to prevent the detection of blurr states, especially when using vbFRET.
Subgroup selection allows to visualize and analyze particular molecule subgroups in modules Histogram analysis and Transition analysis. Molecule subgroups are defined by the tags created and applied in the Trace manager of module Trace processing.