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RNAcentral / rnacentral-import-pipeline

RNAcentral data import pipeline
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Fix taxonomy & number of species #124

Closed afg1 closed 1 year ago

afg1 commented 2 years ago

Something is wrong with the way we generate taxonomy trees, and how we calculate the number of species in which an RNA is found.

For example: https://rnacentral.org/rna/URS0000EF28B1/9606

Says it is found in 6 species, but the taxonomy tree shows only human and one single node at the domain level.

Another weird one: https://rnacentral.org/rna/URS0000089FC1/4932

which is showing up in 486 species, which mostly seem to be strains of S. cerevisiae

This may be a problem in RNAcentral/rnacentral-webcode rather than the import pipeline

blakesweeney commented 1 year ago

This appears to fixed recently.