Open afg1 opened 2 years ago
We should automatically check for obsoloete GO terms and remove them.
I did this manually for the last release, with some sed commands around here: https://github.com/RNAcentral/rnacentral-import-pipeline/blob/dev/workflows/lookup-ontology-info.nf#L13
sed
Example command: sed -i '/GO:0000512/d' unique-terms.txt
sed -i '/GO:0000512/d' unique-terms.txt
We should automatically check for obsoloete GO terms and remove them.
I did this manually for the last release, with some
sedcommands around here: https://github.com/RNAcentral/rnacentral-import-pipeline/blob/dev/workflows/lookup-ontology-info.nf#L13Example command:
sed -i '/GO:0000512/d' unique-terms.txt