Label sequences that match Pfam domains

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Label sequences that match Pfam domains #73

Open AntonPetrov opened 8 years ago

AntonPetrov commented 8 years ago

Example: a possible mRNA (resolvase) matches Pfam PF00589.20.

nataquinones commented 7 years ago

There are about 1000 sequences, coming from the same publication, that are labeled as uncharacterized protein. Good group to test check for Pfam matches? http://rnacentral.org/search?q=pub_id:%22434545%22

AntonPetrov commented 7 years ago

Great example, thank you Natalia!

I tried this sequence and this one using Pfam web search but it gave no domain, only a bunch of stop codons.

Looking at the ENA entries (example) where one of the sequences came from, it seems like the product is a protein, but the type is a putative ncRNA. Not sure what the authors meant.

I guess we will accumulate more examples like this and see what needs to be done.