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RSchmirler / data-repo_plm-finetune-eval

Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
https://www.nature.com/articles/s41467-024-51844-2
Creative Commons Attribution 4.0 International
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notebook run in local runtime? mounting drive is unsupported in the environment. #3

Open wangjiaqi8710 opened 4 weeks ago

wangjiaqi8710 commented 4 weeks ago

Screenshot from 2024-09-27 09-45-14

Is the fine-tune notebook can be run using local machines by connecting to a local runtime? when I tried to do that, and in the "## Imports and env. variables" step, it reports the error shown in the screenshot above. May I know what is the problem?

Thanks, JQ

RSchmirler commented 3 weeks ago

Hi @wangjiaqi8710 ,

if you want to run the notebooks in a local runtime I would recommend using the notebooks available in git (e.g. https://github.com/RSchmirler/data-repo_plm-finetune-eval/blob/main/notebooks/finetune/Finetuning_per_protein.ipynb) and use the local drive instead.

or do you specifically need to mount it to your google drive ?