RTIInternational / biocloud_docker_tools

Docker library providing a catalog of images for RTI's cloud-based bioinformatics toolkit.
https://hub.docker.com/u/rtibiocloud
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Update Dockerfile to resolve errors #46

Closed menger5 closed 3 months ago

menger5 commented 3 months ago

Updated ENV variables and added command to RUN variable to answer prompt

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jaamarks commented 3 months ago

Also,

# Configure CRAN for package retrieval
RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile
RUN Rscript -e "install.packages('getopt', dependencies = T)"
RUN Rscript -e "install.packages(c('dplyr', 'httr', 'stringr','lubridate','sevenbridges2'), dependencies = T)"
RUN Rscript -e "library('getopt');##### R SESSION INFORMATION #####; sessionInfo()"