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RTIInternational / biocloud_gwas_workflows

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Create workflow for making id reference files #9

Open alexwaldrop opened 4 years ago

alexwaldrop commented 4 years ago

@ngaddis you did some sort of magic to create those snp id reference files and we should automate that.

alexwaldrop commented 4 years ago

Maybe this would be a good starting project for @jaamarks if he wants to dip his toes in the water?

jaamarks commented 4 years ago

I would like to dip. What are the details?

alexwaldrop commented 4 years ago

Hell yes! What we can do is get @ngaddis to lay out the pipeline either as a bash script or README markdown somewhere and then we can work together to break that pipeline down into individual WDL tasks. Once we have a plan for the WDL steps involved, we'll work together on creating any new WDL modules and associated Docker images if need be. Then finally we can glue them all together into a single workflow in this repo. We can discuss details as soon as we get a layout of the pipeline itself.

jaamarks commented 4 years ago

Awesome I'm in!