RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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Why do NCBI genes have names "Genetic locus associated with..." #164

Closed saramsey closed 2 years ago

saramsey commented 2 years ago

This issue was first reported by @edeutsch in RTX issue 1699.

saramsey commented 2 years ago

This appears to have happened in commit 84c8d524b9d6cdd12bb6bd823abf30f8d8dc7eb0 to fix RTX issue #1220

saramsey commented 2 years ago

This appears to be a bug due to commit 84c8d52

saramsey commented 2 years ago

I think this should be a simple fix.

saramsey commented 2 years ago

After my fix, only 284 genes are now being modified:

(base) sramsey-laptop:issue-164 sramsey$ grep 'Genetic locus associated with' kg-ncbi.json  | grep full_name | wc -l
284
saramsey commented 2 years ago

The 284 genes look to be mostly genetic conditions:

(base) sramsey-laptop:issue-164 sramsey$ grep 'Genetic locus associated with' kg-ncbi.json
            "full_name": "Genetic locus associated with acrocallosal syndrome",
            "name": "Genetic locus associated with ACLS",
            "full_name": "Genetic locus associated with albinism-deafness syndrome",
            "name": "Genetic locus associated with ADFN",
            "full_name": "Genetic locus associated with AF8 temperature sensitivity complementing",
            "name": "Genetic locus associated with AF8T",
            "full_name": "Genetic locus associated with ankyloblepharon filiforme adnatum",
            "name": "Genetic locus associated with AFA",
            "full_name": "Genetic locus associated with acrofacial dysostosis 1, Nager type",
            "name": "Genetic locus associated with AFD1",
            "full_name": "Genetic locus associated with agammaglobulinemia, X-linked 2 (with growth hormone deficiency)",
            "name": "Genetic locus associated with AGMX2",
            "full_name": "Genetic locus associated with Aicardi syndrome",
            "name": "Genetic locus associated with AIC",
            "full_name": "Genetic locus associated with amelogenesis imperfecta 3, hypomaturation or hypoplastic type",
            "name": "Genetic locus associated with AIH3",
            "full_name": "Genetic locus associated with amyotrophic lateral sclerosis 3 (autosomal dominant)",
            "name": "Genetic locus associated with ALS3",
            "full_name": "Genetic locus associated with arthrogryposis multiplex congenita, neurogenic",
            "name": "Genetic locus associated with AMCN",
            "full_name": "Genetic locus associated with anophthalmos 1 (with mental retardation, without limb anomalies or dental or urogenital abnormalities)",
            "name": "Genetic locus associated with ANOP1",
            "full_name": "Genetic locus associated with arrhythmogenic right ventricular dysplasia 3",
            "name": "Genetic locus associated with ARVD3",
            "full_name": "Genetic locus associated with arrhythmogenic right ventricular dysplasia 4",
            "name": "Genetic locus associated with ARVD4",
            "full_name": "Genetic locus associated with atrial septal defect 1",
            "name": "Genetic locus associated with ASD1",
            "full_name": "Genetic locus associated with asphixiating thoracic dystrophy (chondroectodermal dysplasia-like syndrome)",
            "name": "Genetic locus associated with ATD",
            "full_name": "Genetic locus associated with atherosclerosis susceptibility (lipoprotein associated)",
            "name": "Genetic locus associated with ATHS",
            "full_name": "Genetic locus associated with azoospermia factor 1",
            "name": "Genetic locus associated with AZF1",
            "full_name": "Genetic locus associated with B cell CLL/lymphoma 5",
            "name": "Genetic locus associated with BCL5",
            "full_name": "Genetic locus associated with baboon M7 virus integration site",
            "name": "Genetic locus associated with BEVI",
            "full_name": "Genetic locus associated with central areolar choroidal dystrophy",
            "name": "Genetic locus associated with CACD",
            "full_name": "Genetic locus associated with cataract, congenital, cerulean type, 1",
            "name": "Genetic locus associated with CCA1",
            "full_name": "Genetic locus associated with chondrocalcinosis 1 (calcium pyrophosphate-deposition disease, early onset osteoarthritis)",
            "name": "Genetic locus associated with CCAL1",
            "full_name": "Genetic locus associated with cataract, congenital, total",
            "name": "Genetic locus associated with CCT",
            "full_name": "Genetic locus associated with congenital dyserythropoietic anemia, type III",
            "name": "Genetic locus associated with CDAN3",
            "full_name": "Genetic locus associated with corneal dystrophy of Bowman layer type II (Thiel-Behnke)",
            "name": "Genetic locus associated with CDB2",
            "full_name": "Genetic locus associated with cognitive function 1, social",
            "name": "Genetic locus associated with CGF1",
            "full_name": "Genetic locus associated with creatine kinase, ectopic expression",
            "name": "Genetic locus associated with CKBE",
            "full_name": "Genetic locus associated with cerebellar ataxia 3 (cerebellar parenchyma disorder 1)",
            "name": "Genetic locus associated with CLA3",
            "full_name": "Genetic locus associated with cardiomyopathy, dilated 1B (autosomal dominant)",
            "name": "Genetic locus associated with CMD1B",
            "full_name": "Genetic locus associated with cutaneous malignant melanoma/dysplastic nevus",
            "name": "Genetic locus associated with CMM",
            "full_name": "Genetic locus associated with Charcot-Marie-Tooth neuropathy, X-linked 2 (recessive)",
            "name": "Genetic locus associated with CMTX2",
            "full_name": "Genetic locus associated with Charcot-Marie-Tooth neuropathy, X-linked 3 (dominant)",
            "name": "Genetic locus associated with CMTX3",
            "full_name": "Genetic locus associated with cornea plana 1 (autosomal dominant)",
            "name": "Genetic locus associated with CNA1",
            "full_name": "Genetic locus associated with Carney complex type 2, multiple neoplasia and lentiginosis",
            "name": "Genetic locus associated with CNC2",
            "full_name": "Genetic locus associated with cone dystrophy 2 (X-linked)",
            "name": "Genetic locus associated with COD2",
            "full_name": "Genetic locus associated with Coats disease",
            "name": "Genetic locus associated with CTD",
            "full_name": "Genetic locus associated with cone rod dystrophy 1 (autosomal dominant)",
            "name": "Genetic locus associated with CORD1",
            "full_name": "Genetic locus associated with cataract, anterior polar 1",
            "name": "Genetic locus associated with CTAA1",
            "full_name": "Genetic locus associated with cataract, anterior polar 2",
            "name": "Genetic locus associated with CTAA2",
            "full_name": "Genetic locus associated with coxsackie virus B3 sensitivity",
            "name": "Genetic locus associated with CXB3S",
            "full_name": "Genetic locus associated with cystoid macular dystrophy",
            "name": "Genetic locus associated with CYMD",
            "full_name": "Genetic locus associated with deafness, X-linked 3",
            "name": "Genetic locus associated with DFNX3",
            "full_name": "Genetic locus associated with deafness, autosomal dominant 7",
            "name": "Genetic locus associated with DFNA7",
            "full_name": "Genetic locus associated with deafness, autosomal dominant 16",
            "name": "Genetic locus associated with DFNA16",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 5",
            "name": "Genetic locus associated with DFNB5",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 13",
            "name": "Genetic locus associated with DFNB13",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 14",
            "name": "Genetic locus associated with DFNB14",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 17",
            "name": "Genetic locus associated with DFNB17",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 20",
            "name": "Genetic locus associated with DFNB20",
            "full_name": "Genetic locus associated with diaphragmatic hernia 1",
            "name": "Genetic locus associated with DIH1",
            "full_name": "Genetic locus associated with dandy-walker syndrome",
            "name": "Genetic locus associated with DWS",
            "full_name": "Genetic locus associated with dystonia 7, torsion (autosomal dominant)",
            "name": "Genetic locus associated with DYT7",
            "full_name": "Genetic locus associated with dyslexia susceptibility 1",
            "name": "Genetic locus associated with DYX1",
            "full_name": "Genetic locus associated with ECHO virus (serotypes 4, 6, 11, 19) sensitivity",
            "name": "Genetic locus associated with E11S",
            "full_name": "Genetic locus associated with epidermolysis bullosa, macular type",
            "name": "Genetic locus associated with EBM",
            "full_name": "Genetic locus associated with epidermolysis bullosa 3, progressiva",
            "name": "Genetic locus associated with EBR3",
            "full_name": "Genetic locus associated with ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 1",
            "name": "Genetic locus associated with EEC1",
            "full_name": "Genetic locus associated with electro-encephalographic variant pattern 1",
            "name": "Genetic locus associated with EEGV1",
            "full_name": "Genetic locus associated with epilepsy, generalized, idiopathic",
            "name": "Genetic locus associated with EGI",
            "full_name": "Genetic locus associated with enuresis, nocturnal 1",
            "name": "Genetic locus associated with ENUR1",
            "full_name": "Genetic locus associated with enuresis, nocturnal 2",
            "name": "Genetic locus associated with ENUR2",
            "full_name": "Genetic locus associated with excision repair complementing defective repair in mouse cells",
            "name": "Genetic locus associated with ERCM1",
            "full_name": "Genetic locus associated with essential tremor 2",
            "name": "Genetic locus associated with ETM2",
            "full_name": "Genetic locus associated with exostoses (multiple) 3",
            "name": "Genetic locus associated with EXT3",
            "full_name": "Genetic locus associated with F-cell production 1",
            "name": "Genetic locus associated with FCP1",
            "full_name": "Genetic locus associated with febrile convulsions 1",
            "name": "Genetic locus associated with FEB1",
            "full_name": "Genetic locus associated with febrile convulsions 2",
            "name": "Genetic locus associated with FEB2",
            "full_name": "Genetic locus associated with FG syndrome 2",
            "name": "Genetic locus associated with FGS2",
            "full_name": "Genetic locus associated with Friedreich ataxia 2",
            "name": "Genetic locus associated with FRDA2",
            "full_name": "Genetic locus associated with facioscapulohumeral muscular dystrophy 1A",
            "name": "Genetic locus associated with FSHMD1A",
            "full_name": "Genetic locus associated with facioscapulohumeral muscular dystrophy 1B",
            "name": "Genetic locus associated with FSHMD1B",
            "full_name": "Genetic locus associated with polykaryocytosis promoter",
            "name": "Genetic locus associated with FUSE",
            "full_name": "Genetic locus associated with growth control, Y chromosome influenced",
            "name": "Genetic locus associated with GCY",
            "full_name": "Genetic locus associated with glaucoma 1, open angle, B (adult-onset)",
            "name": "Genetic locus associated with GLC1B",
            "full_name": "Genetic locus associated with glaucoma 1, open angle, C",
            "name": "Genetic locus associated with GLC1C",
            "full_name": "Genetic locus associated with glaucoma 1, open angle, D (adult-onset)",
            "name": "Genetic locus associated with GLC1D",
            "full_name": "Genetic locus associated with glaucoma 3, primary infantile, B",
            "name": "Genetic locus associated with GLC3B",
            "full_name": "Genetic locus associated with glycosuria 1, renal",
            "name": "Genetic locus associated with GLYS1",
            "full_name": "Genetic locus associated with geniospasm 1",
            "name": "Genetic locus associated with GSM1",
            "full_name": "Genetic locus associated with Gilles de la Tourette syndrome",
            "name": "Genetic locus associated with GTS",
            "full_name": "Genetic locus associated with hair color 2 (red)",
            "name": "Genetic locus associated with HCL2",
            "full_name": "Genetic locus associated with human coronavirus sensitivity",
            "name": "Genetic locus associated with HCVS",
            "full_name": "Genetic locus associated with holoprosencephaly 1, alobar",
            "name": "Genetic locus associated with HPE1",
            "full_name": "Genetic locus associated with hereditary persistence of fetal hemoglobin, heterocellular, Indian type",
            "name": "Genetic locus associated with HPFH2",
            "full_name": "Genetic locus associated with hypoparathyroidism",
            "name": "Genetic locus associated with HPT",
            "full_name": "Genetic locus associated with hypertrichosis 1 (universalis, congenital)",
            "name": "Genetic locus associated with HTC1",
            "full_name": "Genetic locus associated with hypertrichosis 2 (generalized, congenital)",
            "name": "Genetic locus associated with HTC2",
            "full_name": "Genetic locus associated with high L-leucine transport",
            "name": "Genetic locus associated with HTL",
            "full_name": "Genetic locus associated with inflammatory bowel disease 2",
            "name": "Genetic locus associated with IBD2",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 3",
            "name": "Genetic locus associated with IDDM3",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 4",
            "name": "Genetic locus associated with IDDM4",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 6",
            "name": "Genetic locus associated with IDDM6",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 7",
            "name": "Genetic locus associated with IDDM7",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 8",
            "name": "Genetic locus associated with IDDM8",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 11",
            "name": "Genetic locus associated with IDDM11",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 13",
            "name": "Genetic locus associated with IDDM13",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 15",
            "name": "Genetic locus associated with IDDM15",
            "full_name": "Genetic locus associated with immunoglobulin E concentration, serum",
            "name": "Genetic locus associated with IGES",
            "full_name": "Genetic locus associated with iris hypoplasia with glaucoma 1",
            "name": "Genetic locus associated with IHG1",
            "full_name": "Genetic locus associated with Jacobsen syndrome",
            "name": "Genetic locus associated with JBS",
            "full_name": "Genetic locus associated with keratolytic winter erythema (Oudtshoorn skin disease)",
            "name": "Genetic locus associated with KWE",
            "full_name": "Genetic locus associated with lymphokine-activated killer cell ligand",
            "name": "Genetic locus associated with LAKLG",
            "full_name": "Genetic locus associated with microphthalmia or anophthalmia and associated anomalies",
            "name": "Genetic locus associated with MAA",
            "full_name": "Genetic locus associated with major affective disorder 1",
            "name": "Genetic locus associated with MAFD1",
            "full_name": "Genetic locus associated with major affective disorder 2",
            "name": "Genetic locus associated with MAFD2",
            "full_name": "Genetic locus associated with Moebius syndrome 1",
            "name": "Genetic locus associated with MBS1",
            "full_name": "Genetic locus associated with macular dystrophy, retinal, 1 (North Carolina type)",
            "name": "Genetic locus associated with MCDR1",
            "full_name": "Genetic locus associated with muscular dystrophy, with rimmed vacuoles",
            "name": "Genetic locus associated with MDRV",
            "full_name": "Genetic locus associated with malignant hyperthermia susceptibility 2",
            "name": "Genetic locus associated with MHS2",
            "full_name": "Genetic locus associated with malignant hyperthermia susceptibility 4",
            "name": "Genetic locus associated with MHS4",
            "full_name": "Genetic locus associated with malignant hyperthermia susceptibility 6",
            "name": "Genetic locus associated with MHS6",
            "full_name": "Genetic locus associated with mental retardation-skeletal dysplasia",
            "name": "Genetic locus associated with MRSD",
            "full_name": "Genetic locus associated with mental retardation, X-linked 14",
            "name": "Genetic locus associated with MRX14",
            "full_name": "Genetic locus associated with mental retardation, X-linked 20",
            "name": "Genetic locus associated with MRX20",
            "full_name": "Genetic locus associated with mental retardation, X-linked 23",
            "name": "Genetic locus associated with MRX23",
            "full_name": "Genetic locus associated with multiple sclerosis",
            "name": "Genetic locus associated with MS",
            "full_name": "Genetic locus associated with mental retardation, X-linked 42",
            "name": "Genetic locus associated with MRX42",
            "full_name": "Genetic locus associated with mental retardation, X-linked 49",
            "name": "Genetic locus associated with MRX49",
            "full_name": "Genetic locus associated with mental retardation, X-linked 53",
            "name": "Genetic locus associated with MRX53",
            "full_name": "Genetic locus associated with mental retardation, X-linked, syndromic 7",
            "name": "Genetic locus associated with MRXS7",
            "full_name": "Genetic locus associated with microcephaly with spastic diplegia (Paine syndrome)",
            "name": "Genetic locus associated with MSD",
            "full_name": "Genetic locus associated with myopia 1 (X-linked)",
            "name": "Genetic locus associated with MYP1",
            "full_name": "Genetic locus associated with myopia 2 (high grade, autosomal dominant)",
            "name": "Genetic locus associated with MYP2",
            "full_name": "Genetic locus associated with non insulin dependent diabetes mellitus 1",
            "name": "Genetic locus associated with NIDDM1",
            "full_name": "Genetic locus associated with non insulin dependent diabetes mellitus 2",
            "name": "Genetic locus associated with NIDDM2",
            "full_name": "Genetic locus associated with natural killer cell susceptibility 1",
            "name": "Genetic locus associated with NKS1",
            "full_name": "Genetic locus associated with neutrophil migration",
            "name": "Genetic locus associated with NM",
            "full_name": "Genetic locus associated with nystagmus 2, congenital autosomal dominant",
            "name": "Genetic locus associated with NYS2",
            "full_name": "Genetic locus associated with nystagmus 3, congenital autosomal dominant",
            "name": "Genetic locus associated with NYS3",
            "full_name": "Genetic locus associated with ocular albinism and sensorineural deafness",
            "name": "Genetic locus associated with OASD",
            "full_name": "Genetic locus associated with orofacial cleft 1",
            "name": "Genetic locus associated with OFC1",
            "full_name": "Genetic locus associated with orofacial cleft 2",
            "name": "Genetic locus associated with OFC2",
            "full_name": "Genetic locus associated with orofacial cleft 3",
            "name": "Genetic locus associated with OFC3",
            "full_name": "Genetic locus associated with optic atrophy 2 (obscure)",
            "name": "Genetic locus associated with OPA2",
            "full_name": "Genetic locus associated with ophthalmoplegia, external, with myopia",
            "name": "Genetic locus associated with OPEM",
            "full_name": "Genetic locus associated with otosclerosis 1",
            "name": "Genetic locus associated with OTSC1",
            "full_name": "Genetic locus associated with Parkinson disease 3 (autosomal dominant, Lewy body)",
            "name": "Genetic locus associated with PARK3",
            "full_name": "Genetic locus associated with polycystic ovary syndrome 1",
            "name": "Genetic locus associated with PCOS1",
            "full_name": "Genetic locus associated with Paget disease of bone 1",
            "name": "Genetic locus associated with PDB1",
            "full_name": "Genetic locus associated with pigment disorder, reticulate",
            "name": "Genetic locus associated with PDR",
            "full_name": "Genetic locus associated with preeclampsia/eclampsia 1",
            "name": "Genetic locus associated with PEE1",
            "full_name": "Genetic locus associated with polycystic kidney disease 3 (autosomal dominant)",
            "name": "Genetic locus associated with PKD3",
            "full_name": "Genetic locus associated with primary retinal dysplasia",
            "name": "Genetic locus associated with PRD",
            "full_name": "Genetic locus associated with Prieto X-linked mental retardation syndrome",
            "name": "Genetic locus associated with PRS",
            "full_name": "Genetic locus associated with ptosis, congenital 1 (autosomal dominant)",
            "name": "Genetic locus associated with PTOS1",
            "full_name": "Genetic locus associated with retinal cone dystrophy 1",
            "name": "Genetic locus associated with RCD1",
            "full_name": "Genetic locus associated with Rieger syndrome 2",
            "name": "Genetic locus associated with RIEG2",
            "full_name": "Genetic locus associated with rippling muscle disease 1",
            "name": "Genetic locus associated with RMD1",
            "full_name": "Genetic locus associated with retinitis pigmentosa 6 (X-linked recessive)",
            "name": "Genetic locus associated with RP6",
            "full_name": "Genetic locus associated with retinitis pigmentosa 22 (autosomal recessive)",
            "name": "Genetic locus associated with RP22",
            "full_name": "Genetic locus associated with retinitis pigmentosa 24 (X-linked recessive)",
            "name": "Genetic locus associated with RP24",
            "full_name": "Genetic locus associated with suppression of anchorage independence 1",
            "name": "Genetic locus associated with SAI1",
            "full_name": "Genetic locus associated with schizophrenia disorder 3",
            "name": "Genetic locus associated with SCZD3",
            "full_name": "Genetic locus associated with schizophrenia disorder 1",
            "name": "Genetic locus associated with SCZD1",
            "full_name": "Genetic locus associated with schizophrenia disorder 2",
            "name": "Genetic locus associated with SCZD2",
            "full_name": "Genetic locus associated with Stoltzfus blood group",
            "name": "Genetic locus associated with SF",
            "full_name": "Genetic locus associated with split hand/foot malformation (ectrodactyly) type 2",
            "name": "Genetic locus associated with SHFM2",
            "full_name": "Genetic locus associated with spastic paraplegia 5B (autosomal recessive)",
            "name": "Genetic locus associated with SPG5B",
            "full_name": "Genetic locus associated with suppression of tumorigenicity 2",
            "name": "Genetic locus associated with ST2",
            "full_name": "Genetic locus associated with suppression of tumorigenicity 3",
            "name": "Genetic locus associated with ST3",
            "full_name": "Genetic locus associated with suppression of tumorigenicity 8 (ovarian)",
            "name": "Genetic locus associated with ST8",
            "full_name": "Genetic locus associated with total anomalous pulmonary venous return 1",
            "name": "Genetic locus associated with TAPVR1",
            "full_name": "Genetic locus associated with thoracoabdominal syndrome",
            "name": "Genetic locus associated with THAS",
            "full_name": "Genetic locus associated with thymoma",
            "name": "Genetic locus associated with THM",
            "full_name": "Genetic locus associated with torticollis, keloids, cryptorchidism and renal dysplasia",
            "name": "Genetic locus associated with TKCR",
            "full_name": "Genetic locus associated with sclerotylosis",
            "name": "Genetic locus associated with TYS",
            "full_name": "Genetic locus associated with Usher syndrome 1E (autosomal recessive, severe)",
            "name": "Genetic locus associated with USH1E",
            "full_name": "Genetic locus associated with vesicular stomatitis virus defective interfering particle suppression",
            "name": "Genetic locus associated with VDI",
            "full_name": "Genetic locus associated with vitelliform macular dystrophy, atypical",
            "name": "Genetic locus associated with VMD1",
            "full_name": "Genetic locus associated with atrioventricular septal defect 1",
            "name": "Genetic locus associated with AVSD1",
            "full_name": "Genetic locus associated with Waardenburg syndrome, type 2B",
            "name": "Genetic locus associated with WS2B",
            "full_name": "Genetic locus associated with Wilms tumor 2",
            "name": "Genetic locus associated with WT2",
            "full_name": "Genetic locus associated with Xm(a) antigen",
            "name": "Genetic locus associated with XM",
            "full_name": "Genetic locus associated with X-linked suppressor of LU antigens",
            "name": "Genetic locus associated with XS",
            "full_name": "Genetic locus associated with cataract, congenital, Volkmann type",
            "name": "Genetic locus associated with CCV",
            "full_name": "Genetic locus associated with Methylation modifier for class I HLA",
            "name": "Genetic locus associated with MEMO1",
            "full_name": "Genetic locus associated with Acute insulin response (2)",
            "name": "Genetic locus associated with AIR",
            "full_name": "Genetic locus associated with Minisatellite 33.6",
            "name": "Genetic locus associated with D1S111",
            "full_name": "Genetic locus associated with Pseudohypoaldosteronism type II (gene A)",
            "name": "Genetic locus associated with PHA2A",
            "full_name": "Genetic locus associated with predisposing for prostate cancer",
            "name": "Genetic locus associated with PCAP",
            "full_name": "Genetic locus associated with Leptin, serum levels of",
            "name": "Genetic locus associated with LEPQTL1",
            "full_name": "Genetic locus associated with small cell cancer of the lung",
            "name": "Genetic locus associated with SCLC1",
            "full_name": "Genetic locus associated with Moebius syndrome 2",
            "name": "Genetic locus associated with MBS2",
            "full_name": "Genetic locus associated with Craniosynostosis, Adelaide type",
            "name": "Genetic locus associated with CRSA",
            "full_name": "Genetic locus associated with psoriasis susceptibility 3",
            "name": "Genetic locus associated with PSORS3",
            "full_name": "Genetic locus associated with Fecundity gene, Boorla, of sheep, homolog of",
            "name": "Genetic locus associated with FECB",
            "full_name": "Genetic locus associated with Leukocyte antigen group 5",
            "name": "Genetic locus associated with LAG5",
            "full_name": "Genetic locus associated with Temperature sensitivity complementation, ts13",
            "name": "Genetic locus associated with TS13",
            "full_name": "Genetic locus associated with eosinophilia, familial",
            "name": "Genetic locus associated with EOS",
            "full_name": "Genetic locus associated with hemangioma, capillary, hereditary",
            "name": "Genetic locus associated with HEMC",
            "full_name": "Genetic locus associated with Plasmodium falciparum blood infection levels",
            "name": "Genetic locus associated with PFBI",
            "full_name": "Genetic locus associated with Schistosoma mansoni, susceptibility/resistance to",
            "name": "Genetic locus associated with SM1",
            "full_name": "Genetic locus associated with immune response to synthetic polypeptides 1",
            "name": "Genetic locus associated with IGLP1",
            "full_name": "Genetic locus associated with immune response to synthetic polypeptides 2",
            "name": "Genetic locus associated with IGLP2",
            "full_name": "Genetic locus associated with Immune response to synthetic polypeptide--IRGAT",
            "name": "Genetic locus associated with IGAT",
            "full_name": "Genetic locus associated with Immune suppression to streptococcal antigen",
            "name": "Genetic locus associated with ISCW",
            "full_name": "Genetic locus associated with ossification of posterior longitudinal ligament of spine",
            "name": "Genetic locus associated with OPLL",
            "full_name": "Genetic locus associated with Ragweed sensitivity",
            "name": "Genetic locus associated with RWS",
            "full_name": "Genetic locus associated with Laryngeal adductor paralysis",
            "name": "Genetic locus associated with LAP",
            "full_name": "Genetic locus associated with pelviureteric junction obstruction",
            "name": "Genetic locus associated with PUJO",
            "full_name": "Genetic locus associated with progressive bifocal chorioretinal atrophy 1",
            "name": "Genetic locus associated with PBCRA1",
            "full_name": "Genetic locus associated with hereditary persistence of fetal hemoglobin, heterocellular",
            "name": "Genetic locus associated with HBFQTL2",
            "full_name": "Genetic locus associated with Pancreatic beta cell, agenesis of",
            "name": "Genetic locus associated with PBCA",
            "full_name": "Genetic locus associated with Temperature sensitivity complementation, cell cycle specific",
            "name": "Genetic locus associated with TS546",
            "full_name": "Genetic locus associated with Goldenhar syndrome",
            "name": "Genetic locus associated with GHS",
            "full_name": "Genetic locus associated with Hyperreflexia",
            "name": "Genetic locus associated with HRX",
            "full_name": "Genetic locus associated with Malignant hyperthermia susceptibility 3",
            "name": "Genetic locus associated with MHS3",
            "full_name": "Genetic locus associated with glaucoma-related pigment dispersion syndrome 1",
            "name": "Genetic locus associated with GPDS1",
            "full_name": "Genetic locus associated with Lymphomatous acute lymphoblastic leukemia",
            "name": "Genetic locus associated with LALL",
            "full_name": "Genetic locus associated with Melkersson-Rosenthal syndrome",
            "name": "Genetic locus associated with MROS",
            "full_name": "Genetic locus associated with Temperature sensitivity complementation, H142",
            "name": "Genetic locus associated with H142T",
            "full_name": "Genetic locus associated with refsum disease, adult, with increased pipecolicacidemia",
            "name": "Genetic locus associated with RDPA",
            "full_name": "Genetic locus associated with DiGeorge syndrome/velocardiofacial syndrome complex 2",
            "name": "Genetic locus associated with DGS2",
            "full_name": "Genetic locus associated with Proline(-) auxotroph, complementation of",
            "name": "Genetic locus associated with PROA",
            "full_name": "Genetic locus associated with erythrocytosis, autosomal recessive benign 2",
            "name": "Genetic locus associated with ECB2",
            "full_name": "Genetic locus associated with Anal canal carcinoma",
            "name": "Genetic locus associated with ANC",
            "full_name": "Genetic locus associated with Breast cancer, 11;22 translocation associated",
            "name": "Genetic locus associated with BRCATA",
            "full_name": "Genetic locus associated with hypertension with brachydactyly",
            "name": "Genetic locus associated with HTNB",
            "full_name": "Genetic locus associated with Alzheimer disease 5",
            "name": "Genetic locus associated with AD5",
            "full_name": "Genetic locus associated with scapuloperoneal syndrome, myopathic type",
            "name": "Genetic locus associated with SPPM",
            "full_name": "Genetic locus associated with male germ cell tumor",
            "name": "Genetic locus associated with MGCT",
            "full_name": "Genetic locus associated with spinal muscular atrophy, congenital nonprogressive, of lower limbs",
            "name": "Genetic locus associated with SMAL",
            "full_name": "Genetic locus associated with Disrupted in B-cell neoplasia",
            "name": "Genetic locus associated with CLLS2",
            "full_name": "Genetic locus associated with X-ray sensitivity",
            "name": "Genetic locus associated with XRS",
            "full_name": "Genetic locus associated with postaxial polydactyly, type A2",
            "name": "Genetic locus associated with PAPA2",
            "full_name": "Genetic locus associated with microcoria, congenital",
            "name": "Genetic locus associated with MCOR",
            "full_name": "Genetic locus associated with cancer, familial, with in vitro radioresistance",
            "name": "Genetic locus associated with BRCD1",
            "full_name": "Genetic locus associated with microphthalmia, autosomal recessive",
            "name": "Genetic locus associated with MCOP1",
            "full_name": "Genetic locus associated with inversus situs, viscerum",
            "name": "Genetic locus associated with IV",
            "full_name": "Genetic locus associated with Mental retardation, severe, with spasticity and tapetoretinal",
            "name": "Genetic locus associated with MRST",
            "full_name": "Genetic locus associated with alpha-thalassemia/mental retardation syndrome, type 1",
            "name": "Genetic locus associated with HBHR",
            "full_name": "Genetic locus associated with cataract, congenital, with microphthalmia",
            "name": "Genetic locus associated with MCOPCT1",
            "full_name": "Genetic locus associated with polycystic kidney disease, infantile severe, with tuberous sclerosis",
            "name": "Genetic locus associated with PKDTS",
            "full_name": "Genetic locus associated with Wilms tumor-3",
            "name": "Genetic locus associated with WT3",
            "full_name": "Genetic locus associated with hypodontia 2 (autosomal recessive)",
            "name": "Genetic locus associated with HYD2",
            "full_name": "Genetic locus associated with myasthenia gravis, familial infantile, 1",
            "name": "Genetic locus associated with CMS1A1",
            "full_name": "Genetic locus associated with Wilms tumor-4",
            "name": "Genetic locus associated with WT4",
            "full_name": "Genetic locus associated with gliosis, familial progressive subcortical",
            "name": "Genetic locus associated with GPSC",
            "full_name": "Genetic locus associated with Carnosinemia (carnosinase)",
            "name": "Genetic locus associated with CNSN",
            "full_name": "Genetic locus associated with Oncogene liposarcoma (DNA segment, single copy, expressed, probes",
            "name": "Genetic locus associated with LPSA",
            "full_name": "Genetic locus associated with benign familial infantile convulsions",
            "name": "Genetic locus associated with BFIS1",
            "full_name": "Genetic locus associated with Progressive familial heart block, type I, locus 1",
            "name": "Genetic locus associated with HBN1",
            "full_name": "Genetic locus associated with Nerve growth factor, gamma subunit",
            "name": "Genetic locus associated with NGFG",
            "full_name": "Genetic locus associated with Myeloid leukemia-related gene (myeloid tumor suppressor)",
            "name": "Genetic locus associated with MLRL",
            "full_name": "Genetic locus associated with Myeloproliferative syndrome, transient (transient abnormal",
            "name": "Genetic locus associated with TAM",
            "full_name": "Genetic locus associated with Beta-amino acids, renal transport of",
            "name": "Genetic locus associated with AABT",
            "full_name": "Genetic locus associated with Beta-adrenergic stimulation, response to",
            "name": "Genetic locus associated with BAS",
            "full_name": "Genetic locus associated with Opitz G syndrome, type II",
            "name": "Genetic locus associated with OGS2",
            "full_name": "Genetic locus associated with Corneal dermoids",
            "name": "Genetic locus associated with CND",
            "full_name": "Genetic locus associated with Diabetes mellitus, insulin-dependent, X-linked, susceptibility to",
            "name": "Genetic locus associated with IDDMX",
            "full_name": "Genetic locus associated with Mental retardation, X-linked, syndromic 12",
            "name": "Genetic locus associated with MRXS12",
            "full_name": "Genetic locus associated with Migraine, familial typical, susceptibility to",
            "name": "Genetic locus associated with MGR2",
            "full_name": "Genetic locus associated with Bazex syndrome",
            "name": "Genetic locus associated with BZX",
            "full_name": "Genetic locus associated with Gustavson mental retardation syndrome (with microcephaly, optic",
            "name": "Genetic locus associated with GUST",
            "full_name": "Genetic locus associated with Immunoneurologic syndrome X-linked, of Wood, Black, and Norbury",
            "name": "Genetic locus associated with INDX",
            "full_name": "Genetic locus associated with Intestinal pseudoobstruction, neuronal, primary idiopathic",
            "name": "Genetic locus associated with IPOX",
            "full_name": "Genetic locus associated with schizophrenia disorder 6",
            "name": "Genetic locus associated with SCZD6",
            "full_name": "Genetic locus associated with schizophrenia disorder 7",
            "name": "Genetic locus associated with SCZD7",
            "full_name": "Genetic locus associated with mental retardation, epileptic seizures, hypogonadism and -genitalism, microcephaly and obesity syndrome",
            "name": "Genetic locus associated with MEHMO",
            "full_name": "Genetic locus associated with suppression of tumorigenicity 11 (pancreas)",
            "name": "Genetic locus associated with ST11",
            "full_name": "Genetic locus associated with insulin dependent diabetes mellitus 17",
            "name": "Genetic locus associated with IDDM17",
            "full_name": "Genetic locus associated with myopia 3 (high grade, autosomal dominant)",
            "name": "Genetic locus associated with MYP3",
            "full_name": "Genetic locus associated with schizophrenia disorder 8",
            "name": "Genetic locus associated with SCZD8",
            "full_name": "Genetic locus associated with patella aplasia-hypoplasia",
            "name": "Genetic locus associated with PTLAH",
            "full_name": "Genetic locus associated with hereditary prostate cancer, X-linked",
            "name": "Genetic locus associated with HPCX",
            "full_name": "Genetic locus associated with episodic muscle weakness, X-linked",
            "name": "Genetic locus associated with EMWX",
            "full_name": "Genetic locus associated with cystic fibrosis modifier 1",
            "name": "Genetic locus associated with CFM1",
            "full_name": "Genetic locus associated with Mesomelic dysplasia, Kantaputra type",
            "name": "Genetic locus associated with MMDK",
            "full_name": "Genetic locus associated with Cataract, posterior polar",
            "name": "Genetic locus associated with CTPP",
            "full_name": "Genetic locus associated with Mental health wellness 1",
            "name": "Genetic locus associated with MHW1",
            "full_name": "Genetic locus associated with psoriasis susceptibility 4",
            "name": "Genetic locus associated with PSORS4",
            "full_name": "Genetic locus associated with Duane retraction syndrome 1",
            "name": "Genetic locus associated with DURS1",
            "full_name": "Genetic locus associated with dehydrated hereditary stomatocytosis",
            "name": "Genetic locus associated with DHS",
            "full_name": "Genetic locus associated with immunoglobulin A (IgA) deficiency susceptibility 1",
            "name": "Genetic locus associated with IGAD1",
            "full_name": "Genetic locus associated with dyslexia susceptibility 3",
            "name": "Genetic locus associated with DYX3",
            "full_name": "Genetic locus associated with Moebius syndrome 3",
            "name": "Genetic locus associated with MBS3",
            "full_name": "Genetic locus associated with cardiomyopathy, dilated 1H (autosomal dominant)",
            "name": "Genetic locus associated with CMD1H",
            "full_name": "Genetic locus associated with nanophthalmos 1",
            "name": "Genetic locus associated with NNO1",
            "full_name": "Genetic locus associated with mental retardation, X-linked 73",
            "name": "Genetic locus associated with MRX73",
            "full_name": "Genetic locus associated with idiopathic basal ganglia calcification 1",
            "name": "Genetic locus associated with IBGC1",
            "full_name": "Genetic locus associated with deafness, autosomal recessive 27",
            "name": "Genetic locus associated with DFNB27",
            "full_name": "Genetic locus associated with deafness, autosomal dominant 30",
            "name": "Genetic locus associated with DFNA30",
            "full_name": "Genetic locus associated with deafness, autosomal dominant 24",
            "name": "Genetic locus associated with DFNA24",
            "full_name": "Genetic locus associated with diabetic nephropathy",
            "name": "Genetic locus associated with DIANPH",
saramsey commented 2 years ago

Commit 81254ac should fix the issue.

saramsey commented 2 years ago

Tagging @edeutsch and @acevedol so they are aware that the fix is implemented in code in the RTX-KG2 master branch, and thus ready to be included in the KG2.7.4 build.

edeutsch commented 2 years ago

This looks very good, thanks!