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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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mapping `SEMMEDDB:diagnoses` to `biolink:biomarker_for` is causing problems #194

Closed saramsey closed 1 year ago

saramsey commented 2 years ago

This issue came to light investigating RTX issue 1774, which was first reported by @dkoslicki.

On the KG2.7.4pre Neo4j database server kg2endpoint3.rtx.ai, when I run this Cypher command,

match (n)-[r:`biolink:biomarker_for` {original_predicate: 'SEMMEDDB:diagnoses'}]->(m) return n.name, m.name limit 1000;

I see that most of the subject nodes in the matching triples are really procedures and not molecular biomarkers. So I think we need to rethink this particular predicate mapping.

n.name m.name
Scanning Electron Microscopy tunica vasculosa lentis
Fluorescein Angiography tunica vasculosa lentis
null Bile duct structure
Tomography, Emission-Computed Cervical rib
angiogram Cervical rib
Ultrasonography Cervical rib
tomography Cervical rib
X-Rays Cervical rib
X-Ray Computed Tomography Cervical rib
Magnetic Resonance Imaging Cervical rib
Plain x-ray Cervical rib
Echocardiography, Transesophageal Persistent Ostium Primum
2D Echocardiography Persistent Ostium Primum
Heart murmur Persistent Ostium Primum
Echocardiography Persistent Ostium Primum
Forced expiratory volume procedure Right aortic arch (disorder)
Medical Imaging Right aortic arch (disorder)
Chest CT Right aortic arch (disorder)
null Right aortic arch (disorder)
Ultrasonography Right aortic arch (disorder)
Microarray Analysis Right aortic arch (disorder)
Thoracoscopy Right aortic arch (disorder)
Angiocardiography Right aortic arch (disorder)
Bronchoscopy Right aortic arch (disorder)
Computed Tomography Angiography Right aortic arch (disorder)
Magnetic Resonance Angiography Right aortic arch (disorder)
Signs and Symptoms, Respiratory Right aortic arch (disorder)
Fetal echocardiography Right aortic arch (disorder)
Diagnostic Imaging Right aortic arch (disorder)
Plain chest X-ray Right aortic arch (disorder)
Esophagram Right aortic arch (disorder)
Barium swallow Right aortic arch (disorder)
Cardiac Catheterization Procedures Right aortic arch (disorder)
Autopsy Right aortic arch (disorder)
Magnetic Resonance Imaging Right aortic arch (disorder)
Echocardiography Right aortic arch (disorder)
Scanning Right aortic arch (disorder)
Echocardiography, Transesophageal Right aortic arch (disorder)
Aortography Right aortic arch (disorder)
Plain x-ray Right aortic arch (disorder)
angiogram Right aortic arch (disorder)
Transthoracic echocardiography Right aortic arch (disorder)
tomography Right aortic arch (disorder)
angiogram Absent left common carotid artery
Laboratory Tests Meckel Diverticulum
Double-Balloon Enteroscopy Meckel Diverticulum
Planar Imaging Meckel Diverticulum
Capsule Endoscopy Meckel Diverticulum
Physical findings Meckel Diverticulum
Biopsy Meckel Diverticulum
Radiologic examination, small intestine, includes multiple serial films Meckel Diverticulum
Sample macroscopy Meckel Diverticulum
Diagnostic tests Meckel Diverticulum
Red blood cell scan Meckel Diverticulum
Work-up Meckel Diverticulum
Ultrasonography, Prenatal Meckel Diverticulum
Ethics Committees, Research Meckel Diverticulum
colonoscopy Meckel Diverticulum
Magnetic Resonance Imaging Meckel Diverticulum
Plain x-ray Meckel Diverticulum
Vomiting Meckel Diverticulum
Nausea Meckel Diverticulum
Pain Meckel Diverticulum
Autopsy Meckel Diverticulum
X-Rays Meckel Diverticulum
diagnostic procedure Meckel Diverticulum
Symptoms Meckel Diverticulum
Angiography, Digital Subtraction Meckel Diverticulum
Abdominal Pain Meckel Diverticulum
Intestinal hemorrhage NOS Meckel Diverticulum
Fetal Ultrasonography Meckel Diverticulum
Laparoscopy Meckel Diverticulum
Gegenhalten Meckel Diverticulum
Fluoroscopy Meckel Diverticulum
Abdomen, Acute Meckel Diverticulum
Diagnostic Techniques, Radioisotope Meckel Diverticulum
Journalist Meckel Diverticulum
Arteriography Meckel Diverticulum
null Meckel Diverticulum
Exploratory laparotomy Meckel Diverticulum
Ultrasonography Meckel Diverticulum
angiogram Meckel Diverticulum
tomography Meckel Diverticulum
Endoscopy Meckel Diverticulum
Medical Imaging Meckel Diverticulum
X-Ray Computed Tomography Meckel Diverticulum
Enteroscopy Meckel Diverticulum
Scanning Meckel Diverticulum
Radionuclide Imaging Meckel Diverticulum
Arteriography Flexion, function
Intestinal hemorrhage NOS Accessory pancreas
Oral Examination Supernumerary cusp
tomography Supernumerary cusp
Echocardiography Supernumerary cusp
Red blood cell morphology procedure Burr cell
Medical Imaging Burr cell
Microscopy, Atomic Force Burr cell
Microscopy, Fluorescence Burr cell
Scanning Electron Microscopy Burr cell
Plain x-ray Cervical lordosis
Early Diagnosis Lumbar lordosis
Low Back Pain Lumbar lordosis
Imbalance Lumbar lordosis
Pain, Postoperative Lumbar lordosis
Plain x-ray Lumbar lordosis
Diagnosis Thoracic kyphosis
Immunohistochemistry Neurosecretory granule
Immunocytochemistry Neurosecretory granule
Histocytochemistry Neurosecretory granule
Immunoelectron microscopy study Neurosecretory granule
Transmission Electron Microscopy Neurosecretory granule
Microscopy, Immunoelectron Neurosecretory granule
In Situ Hybridization Neurosecretory granule
Mediastinal biopsy Neurosecretory granule
Electron Microscopy Neurosecretory granule
Microscopy Neurosecretory granule
Plain x-ray Pelvic inclination
imaging studies Accessory spleen
Elasticity Imaging Techniques Accessory spleen
Pathologic Examination Accessory spleen
PET/CT scan Accessory spleen
Erythrocyte scintigraphy Accessory spleen
Diffusion Magnetic Resonance Imaging Accessory spleen
Syncope Accessory spleen
Laparoscopy Accessory spleen
Differential Diagnosis Accessory spleen
Symptoms Accessory spleen
Ultrasound examination Accessory spleen
Arteriography Accessory spleen
Splenomegaly Accessory spleen
Diffusion weighted imaging Accessory spleen
Immunoperoxidase stain Accessory spleen
Fine needle aspiration biopsy Accessory spleen
X-Ray Computed Tomography Accessory spleen
Absence of pain sensation Accessory spleen
Spleen scintigraphy Accessory spleen
Medical Imaging Accessory spleen
Ultrasonography Accessory spleen
tomography Accessory spleen
Radionuclide Imaging Accessory spleen
Tomography, Emission-Computed, Single-Photon Accessory spleen
Scanning Accessory spleen
Magnetic Resonance Imaging Accessory spleen
Differential Diagnosis Accessory breast
Fine needle aspiration biopsy Accessory breast
Magnetic Resonance Imaging Accessory breast
Ultrasonography Accessory breast
Excision biopsy Accessory breast
Biopsy Accessory breast
Electrocardiogram Accessory breast
Diagnosis chronic inflammatory response
Biopsy chronic inflammatory response
Tryptophan measurement Hypersensitivity
Cancer Diagnosis Hypersensitivity
Clinical Pharmacists Hypersensitivity
Challenge tests Hypersensitivity
Aluminum measurement Hypersensitivity
Elution Hypersensitivity
Magnetoencephalography Hypersensitivity
Chemokine (C-X-C Motif) Ligand 10 Measurement Hypersensitivity
Diagnostic Neoplasm Staging Hypersensitivity
Spectral Domain-Optical Coherence Tomography Hypersensitivity
Vision Tests Hypersensitivity
tomosynthesis Hypersensitivity
null Hypersensitivity
Soft Agar Assay Hypersensitivity
Strand Displacement Amplification Hypersensitivity
infrared imaging Hypersensitivity
Spectrometry Hypersensitivity
Cystoscopy Hypersensitivity
Aldosterone to Renin Activity Ratio Measurement Hypersensitivity
Sonoelastography Hypersensitivity
Immunochromatography Hypersensitivity
Immunocytochemistry Hypersensitivity
Radioisotope scan of bone Hypersensitivity
Immunochromatographic Assay Hypersensitivity
Mucosal biopsy Hypersensitivity
Colposcopy Hypersensitivity
Capsule Endoscopy Hypersensitivity
Functional assessment Hypersensitivity
Endometrial scraping Hypersensitivity
Radiologist 1 Hypersensitivity
Anterior drawer test Hypersensitivity
Toxicity Tests, Acute Hypersensitivity
Immunologic Techniques Hypersensitivity
Magnetic Resonance Angiography Hypersensitivity
Rapid Antigen Test Hypersensitivity
Morphometry Hypersensitivity
Oral Glucose Tolerance Test Hypersensitivity
Insulin sensitivity index Hypersensitivity
Cancer Screening Tests Hypersensitivity
Doppler Ultrasound (procedure) Hypersensitivity
molecular diagnostics (lab procedure) Hypersensitivity
Transthoracic needle biopsy Hypersensitivity
Immunochemiluminometric assay Hypersensitivity
Antibody screen Hypersensitivity
Dual energy computed tomography Hypersensitivity
Quick Test for Liver Function Hypersensitivity
Pegylation Hypersensitivity
Plain chest X-ray Hypersensitivity
null Hypersensitivity
Plethysmography, Whole Body Hypersensitivity
Immunoglobulin G Subclass 1 Measurement Hypersensitivity
OtherServiceProviderSpecialistHIPAA Hypersensitivity
Electrophoresis, Cellulose Acetate Hypersensitivity
Action Spectrum Hypersensitivity
Internal medicine physicians Hypersensitivity
Digital Radiography Hypersensitivity
Color doppler ultrasound Hypersensitivity
Cholangioscopy Hypersensitivity
Endoscopic Retrograde Cholangiopancreatography Hypersensitivity
Laser Doppler Imaging Hypersensitivity
Multidetector Computed Tomography Hypersensitivity
Electroretinography Hypersensitivity
Imaging Techniques Hypersensitivity
Iterative Reconstruction Hypersensitivity
Oligoclonal protein measurement Hypersensitivity
Estrogen Receptor Measurement Hypersensitivity
B mode ultrasound Hypersensitivity
Neuroimaging Hypersensitivity
Random Amplified Polymorphic DNA Technique Hypersensitivity
Prostate Specific Antigen Density Hypersensitivity
Double-Balloon Enteroscopy Hypersensitivity
Computational analysis Hypersensitivity
Cell Proliferation Assay Hypersensitivity
Computed tomography of orbits Hypersensitivity
High Throughput Screening Hypersensitivity
Observation - diagnostic procedure Hypersensitivity
Functional Imaging Hypersensitivity
Toe Brachial Index Hypersensitivity
Low dose computed tomography of thorax Hypersensitivity
Magnetic resonance imaging of breast Hypersensitivity
Phototesting Hypersensitivity
Immunoprecipitation Hypersensitivity
Palpation Hypersensitivity
Silver stain method Hypersensitivity
Red Blood Cell Count measurement Hypersensitivity
Examination of breast Hypersensitivity
Contrast enhanced spectral mammography Hypersensitivity
Bioelectric Impedance Analysis Hypersensitivity
Autoantibody measurement Hypersensitivity
Stroop Test Hypersensitivity
Karnofsky Performance Status Hypersensitivity
Test Method Hypersensitivity
Inductively-Coupled Plasma Mass Spectrometry Hypersensitivity
Inverse PCR Hypersensitivity
Esophageal pH Monitoring Hypersensitivity
Formalin Test Hypersensitivity
Spectroscopy, Near-Infrared Hypersensitivity
Nephrologists Hypersensitivity
Antimicrobial susceptibility test (procedure) Hypersensitivity
Susceptibility Testing Hypersensitivity
S-Phase Fraction Hypersensitivity
Inspiratory Vital Capacity Test Hypersensitivity
Neutralization Tests Hypersensitivity
Cytology procedure Hypersensitivity
Blood Sedimentation Hypersensitivity
Assay of volatiles Hypersensitivity
Electrochemical Techniques Hypersensitivity
Immunoglobulin G Subclass 2 Measurement Hypersensitivity
Electrospray Ionization Hypersensitivity
Reporter (occupation) Hypersensitivity
High pressure liquid chromatography procedure Hypersensitivity
Core needle biopsy Hypersensitivity
Liquid Chromatography Hypersensitivity
Culture Techniques Hypersensitivity
Sds-page Hypersensitivity
High resolution Hypersensitivity
Matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry Hypersensitivity
Staff Hypersensitivity
Albumin To Creatinine Protein Ratio Measurement Hypersensitivity
Merging Hypersensitivity
Psychometrics Hypersensitivity
Galactography Hypersensitivity
Ultrasonography, Doppler, Duplex Hypersensitivity
Continuous wave ultrasonic Doppler Hypersensitivity
Scientific Study Hypersensitivity
Hearing Tests Hypersensitivity
Energy Dispersive Spectroscopy Hypersensitivity
F-18 Sodium Fluoride Positron Emission Tomography Hypersensitivity
therapist Hypersensitivity
Mycobacteria culture Hypersensitivity
Cell Separation Hypersensitivity
Positron-Emission Tomography Hypersensitivity
Single Photon Emission Computed Tomography Computed Tomography Hypersensitivity
Foundation for the Accreditation of Cellular Therapy Hypersensitivity
Quantitative Computed Tomography Hypersensitivity
Vendors Hypersensitivity
Skin assessment Hypersensitivity
Infrared Thermography Hypersensitivity
radiologist Hypersensitivity
Spectrophotometry Hypersensitivity
Behavioral Health & Social Service; Social Worker Hypersensitivity
Pathologic Examination Hypersensitivity
Direct assay Hypersensitivity
Histocompatibility Testing Hypersensitivity
Direct immunofluorescence Hypersensitivity
null Hypersensitivity
Single-Cell Analysis Hypersensitivity
Thrombomodulin Assay Hypersensitivity
Conventional Imaging Hypersensitivity
Elasticity Imaging Techniques Hypersensitivity
Alpha one fetoprotein measurement Hypersensitivity
Gas Chromatography/Tandem Mass Spectrometry Hypersensitivity
Oscillometry Hypersensitivity
Computer Assisted Diagnosis Hypersensitivity
Tomography, Emission-Computed Hypersensitivity
Cholangiopancreatography, Magnetic Resonance Hypersensitivity
Blood culture Hypersensitivity
Positive Selection Hypersensitivity
Spectroscopy, Fourier Transform Infrared Hypersensitivity
Illumination Technique Hypersensitivity
Electrochemiluminescence Hypersensitivity
Neuropsychological Tests Hypersensitivity
Fibrinogen assay Hypersensitivity
Agglutination Tests Hypersensitivity
Absolute neutrophil count Hypersensitivity
Primed lymphocyte test Hypersensitivity
Photon Correlation Spectroscopy Hypersensitivity
Toxicity Tests, Chronic Hypersensitivity
Diffuse Optical Tomography Hypersensitivity
Liquid Chromatography/Tandem Mass Spectrometry Hypersensitivity
Computed Tomography Angiography Hypersensitivity
Adenosine deaminase measurement Hypersensitivity
Electrophoresis Hypersensitivity
International Normalized Ratio Hypersensitivity
Pathology procedure Hypersensitivity
Phadiatop infant Hypersensitivity
Positron emission tomography-magnetic resonance imaging Hypersensitivity
Glucose measurement Hypersensitivity
Liquid Biopsy Hypersensitivity
null Hypersensitivity
Immunoglobulin G Subclass 4 Measurement Hypersensitivity
Examination by method Hypersensitivity
Diagnosis, clinical Hypersensitivity
Urine cytology Hypersensitivity
Diffusion Tensor Imaging Hypersensitivity
Polymerase chain reaction analysis Hypersensitivity
null Hypersensitivity
Disk Diffusion Method Hypersensitivity
Liquid Phase Microextraction Hypersensitivity
White Blood Cell Count procedure Hypersensitivity
Differential panel Hypersensitivity
Contrast-Enhanced Ultrasound Hypersensitivity
Nucleic acid sequencing Hypersensitivity
Western Blotting Hypersensitivity
Tomography, Emission-Computed, Single-Photon Hypersensitivity
Microscopy, Scanning Tunneling Hypersensitivity
Cytological Techniques Hypersensitivity
Transient elastography Hypersensitivity
null Hypersensitivity
Enzyme Assays Hypersensitivity
Spectrum Analysis Hypersensitivity
Transmission Electron Microscopy Hypersensitivity
Immunohistochemistry Hypersensitivity
Arthrogram Hypersensitivity
Scientist Hypersensitivity
Carbon Monoxide Diffusing Capability Test Hypersensitivity
Spectrometry, Mass, Electrospray Ionization Hypersensitivity
Spectrum Analysis, Raman Hypersensitivity
Electromagnetic navigation bronchoscopy Hypersensitivity
Dual-Energy X-Ray Absorptiometry Hypersensitivity
Loop-mediated Isothermal Amplification Hypersensitivity
Plain x-ray Hypersensitivity
Contrast-enhanced Magnetic Resonance Imaging Hypersensitivity
Visual field study Hypersensitivity
Comparison.study Hypersensitivity
Angiotensin II Assay Hypersensitivity
Health Screening Hypersensitivity
Lymphangiography Hypersensitivity
Radioisotope scan of lymphatic system Hypersensitivity
Digital Breast Tomosynthesis Hypersensitivity
Mammography Hypersensitivity
Fluorescence Resonance Energy Transfer Hypersensitivity
Immunoenzyme Procedure Hypersensitivity
angiogram Hypersensitivity
Ion Mobility Spectrometry Hypersensitivity
Estimated Glomerular Filtration Rate Hypersensitivity
Fluorescent polarization assay Hypersensitivity
Pyrosequencing Hypersensitivity
Fluorescence Spectroscopy Hypersensitivity
Echography of kidney Hypersensitivity
performance tests Hypersensitivity
Seeding Hypersensitivity
Multiparametric Magnetic Resonance Imaging Hypersensitivity
Cell Culture Hypersensitivity
Magnetic Resonance Spectroscopy Hypersensitivity
Oncologists Hypersensitivity
Specimen preparation Hypersensitivity
Fine needle aspiration biopsy Hypersensitivity
Sensitivity test Hypersensitivity
Detection of virus procedure Hypersensitivity
High Sensitivity Troponin T Assay Hypersensitivity
Cardiac troponin I measurement Hypersensitivity
Liquid Chromatography Mass Spectrometry Hypersensitivity
Midwife Hypersensitivity
Culturing, In Vitro Microbial Hypersensitivity
Radiologic Examination Hypersensitivity
Photoacoustic Imaging Hypersensitivity
Diagnostic Imaging Hypersensitivity
Fluorescent stain method Hypersensitivity
professional occupation status Hypersensitivity
Genetic Variation Analysis Hypersensitivity
Coronary angiography Hypersensitivity
Cell Count Hypersensitivity
PET/CT scan Hypersensitivity
Intravenous Glucose Tolerance Test Hypersensitivity
Diffusion weighted imaging Hypersensitivity
Thermometry Hypersensitivity
Seroreactivity Hypersensitivity
Educator Hypersensitivity
Ki67 Measurement Hypersensitivity
Whole Body Imaging Hypersensitivity
Fecal Immunochemical Test Hypersensitivity
Enrichment (technique) Hypersensitivity
Chromatography, Gas-Liquid Hypersensitivity
FDG-Positron Emission Tomography and Computed Tomography Scan Hypersensitivity
Chemical analysis Hypersensitivity
Diagnosis Hypersensitivity
Gene Cloning Hypersensitivity
Spectrometry, Fluorescence Hypersensitivity
Breast Imaging Reporting and Data System Hypersensitivity
Point-of-Care Testing Hypersensitivity
Total immunoglobulin measurement Hypersensitivity
Nasal Swab (procedure) Hypersensitivity
Single-Molecule Array Hypersensitivity
Radionuclide Imaging Hypersensitivity
Interferometry Hypersensitivity
Chest CT Hypersensitivity
Principal Investigator Hypersensitivity
Anesthesiologist Hypersensitivity
Ultrasonography Hypersensitivity
Electroencephalography Hypersensitivity
Physician Assistants & Advanced Practice Nursing Providers; Physician Assistant Hypersensitivity
Ethics Committees, Research Hypersensitivity
Encounter for Genetic screening NEC in ICD9CM Hypersensitivity
Specific antibody measurement Hypersensitivity
Scanning Hypersensitivity
Individual Hypersensitivity
Caregivers Hypersensitivity
ELISA, antigen capture Hypersensitivity
Visual Analog Pain Scale Hypersensitivity
Early Diagnosis Hypersensitivity
Substance Abuse Detection Hypersensitivity
Microscopy, Confocal Hypersensitivity
Polymerase Chain Reaction Hypersensitivity
Discogram Hypersensitivity
Registrar Hypersensitivity
Spirometry Hypersensitivity
Erythrocyte Mean Corpuscular Hemoglobin Test Hypersensitivity
Differential white blood cell count procedure Hypersensitivity
Chemiluminescence assay Hypersensitivity
Cell hybridization Hypersensitivity
Tomography, Optical Coherence Hypersensitivity
Peak expiratory flow rate measurement Hypersensitivity
Blood basophil count (lab test) Hypersensitivity
Surgeon Hypersensitivity
Patients Hypersensitivity
Gene Expression Profiling Hypersensitivity
Judge Hypersensitivity
Circular Dichroism Hypersensitivity
Mass Spectrometry Hypersensitivity
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Hypersensitivity
Colorimetry Hypersensitivity
Ophthalmic surgeon Hypersensitivity
Magnetic Resonance Imaging Hypersensitivity
Toxin assay procedure Hypersensitivity
Spectrophotometry, Atomic Absorption Hypersensitivity
Immunoassay method Hypersensitivity
Soldiers Hypersensitivity
Medical pathologist Hypersensitivity
Orthopedic Surgeons Hypersensitivity
Microbiologist Hypersensitivity
Alanine measurement Hypersensitivity
Colony-Forming Units Assay Hypersensitivity
Provider Hypersensitivity
Voluntary Workers Hypersensitivity
Enzyme-Linked Immunospot Assay Hypersensitivity
Genetic Testing Hypersensitivity
Veterinarian Hypersensitivity
Antibody studies (procedure) Hypersensitivity
Genetic Analysis Hypersensitivity
Pediatrician (occupation) Hypersensitivity
Laser-Doppler Flowmetry Hypersensitivity
Cloning, Molecular Hypersensitivity
Tuberculin Test Hypersensitivity
Antistreptolysin O titer Hypersensitivity
Dilution technique Hypersensitivity
Hematologic Tests Hypersensitivity
Sensitivity test, SKIN Hypersensitivity
Human leukocyte antigen isotype determination Hypersensitivity
Consultant Hypersensitivity
Endoscopy of nose Hypersensitivity
Family Hypersensitivity
Type 4 hypersensitivity skin test Hypersensitivity
Pulmonary function tests Hypersensitivity
Electrocardiogram Hypersensitivity
Passive Cutaneous Anaphylaxis Hypersensitivity
Coombs Test Hypersensitivity
null Hypersensitivity
Internist Hypersensitivity
Microscopy Hypersensitivity
immunoelectrophoresis Hypersensitivity
Endoscopy Hypersensitivity
Transbronchial lung biopsy Hypersensitivity
Activated clotting time measurement Hypersensitivity
Tissue Culture Techniques Hypersensitivity
Aerobic Culture Hypersensitivity
Dietary & Nutritional Service Providers; Nutritionist Hypersensitivity
Nasal Provocation Tests Hypersensitivity
Farmers Hypersensitivity
Psychological Tests (procedure) Hypersensitivity
Exercise stress test Hypersensitivity
Electronystagmography Hypersensitivity
Maker (occupation) Hypersensitivity
Laboratory Technicians Hypersensitivity
Nurses Hypersensitivity
Laboratory culture Hypersensitivity
thermography Hypersensitivity
Hemagglutination test Hypersensitivity
Prausnitz-Kustner Test Hypersensitivity
Immunologic Tests Hypersensitivity
Electrophoresis, Gel, Two-Dimensional Hypersensitivity
Workers Hypersensitivity
homemaker Hypersensitivity
High sensitivity Hypersensitivity
Titration Hypersensitivity
Immunoglobulin E measurement Hypersensitivity
Allergy testing Hypersensitivity
Bronchoalveolar Lavage Hypersensitivity
Diagnostic tests Hypersensitivity
Dermatoglyphics Hypersensitivity
Fire ant specific IgE antibody measurement Hypersensitivity
Teacher Hypersensitivity
parent Hypersensitivity
null Hypersensitivity
Immunophenotyping Hypersensitivity
Employee Hypersensitivity
Gas Chromatography Hypersensitivity
Histology Procedure Hypersensitivity
Diagnosis, Oral Hypersensitivity
member Hypersensitivity
Dental Service Providers; Dentist Hypersensitivity
Cook (occupation) Hypersensitivity
Fluorescent Antibody Technique, Indirect Hypersensitivity
Basophil Degranulation Test Hypersensitivity
student Hypersensitivity
Research Personnel Hypersensitivity
Rhinomanometry Hypersensitivity
Otolaryngologist Hypersensitivity
Journalist Hypersensitivity
Histocytochemistry Hypersensitivity
Biopsy of skin procedure Hypersensitivity
Coculture Techniques Hypersensitivity
Clinical Enzyme Tests (procedure) Hypersensitivity
Enzyme Immunoassay Hypersensitivity
Fluorescent Antibody Technique Hypersensitivity
Angiography, Digital Subtraction Hypersensitivity
null Hypersensitivity
medical diagnosis Hypersensitivity
Immunoblotting Hypersensitivity
Serologic tests Hypersensitivity
Cell Migration Assays, Macrophage Hypersensitivity
Flow Cytometry Hypersensitivity
Clinical immunologist Hypersensitivity
Genotype determination Hypersensitivity
General Practitioners Hypersensitivity
Cell Migration Assays, Leukocyte Hypersensitivity
Hospital specialist Hypersensitivity
Migration Inhibitory Factor Assay Hypersensitivity
Mantoux test Hypersensitivity
Biological Assay Hypersensitivity
null Hypersensitivity
Countercurrent electrophoresis measurement Hypersensitivity
Toxicology screen, general (procedure) Hypersensitivity
Bronchial Provocation Tests Hypersensitivity
null Hypersensitivity
X-Rays Hypersensitivity
Radioimmunoassay Hypersensitivity
Laboratory Tests Hypersensitivity
Enzyme-Linked Immunosorbent Assay Hypersensitivity
Sequence Analysis Hypersensitivity
Clinician Hypersensitivity
Differential Diagnosis Hypersensitivity
filtration Hypersensitivity
Immunology procedure Hypersensitivity
Immunologist Hypersensitivity
Work-up Hypersensitivity
CD4 Count determination procedure Hypersensitivity
diagnostic procedure Hypersensitivity
Dermatologist Hypersensitivity
Western Blot Hypersensitivity
null Hypersensitivity
Molecular Diagnosis Hypersensitivity
Medical Imaging Hypersensitivity
Physicians Hypersensitivity
Intradermal Tests Hypersensitivity
Health Personnel Hypersensitivity
Gastrointestinal transit procedure Hypersensitivity
Hypersensitivity skin testing Hypersensitivity
Biopsy Hypersensitivity
tomography Hypersensitivity
No-Observed-Adverse-Effect Level Hypersensitivity
Assay Hypersensitivity
Microarray Analysis Hypersensitivity
Skin prick test Hypersensitivity
Patch Tests Hypersensitivity
Migration Inhibitory Tests, Leukocyte Hypersensitivity
Immunodiagnosis Hypersensitivity
Leukocyte histamine release test Hypersensitivity
purification aspects Hypersensitivity
laboratory studies Hypersensitivity
Radioallergosorbent Test Hypersensitivity
Cell Count acute inflammatory response
Coculture Techniques acute inflammatory response
Hematologic Tests acute inflammatory response
Diagnosis type II cellular hypersensitivity
null type II cellular hypersensitivity
Police Aggressive behavior
Encounter for Genetic screening NEC in ICD9CM Aggressive behavior
Needle biopsy procedure Aggressive behavior
Histology Procedure Aggressive behavior
Immunoassay method Aggressive behavior
Digital Rectal Examination Aggressive behavior
Cystoscopy Aggressive behavior
Finding of urine cytology Aggressive behavior
Supervisor (occupation) Aggressive behavior
Diffusion weighted imaging Aggressive behavior
Polymerase Chain Reaction Aggressive behavior
Testosterone measurement Aggressive behavior
Students, Medical Aggressive behavior
Diffusion Magnetic Resonance Imaging Aggressive behavior
Registered nurse Aggressive behavior
Diagnostic tests Aggressive behavior
Reader of medical images Aggressive behavior
magnetic resonance spectroscopic imaging Aggressive behavior
Spectrophotometry Aggressive behavior
Patients Aggressive behavior
Free Prostate Specific Antigen Measurement Aggressive behavior
Breast Carcinoma Aggressive behavior
Fine needle aspiration biopsy Aggressive behavior
Ultrasonography Aggressive behavior
Magnesium measurement Aggressive behavior
Mass Spectrometry Aggressive behavior
Classmate Aggressive behavior
Biological Assay Aggressive behavior
Magnetic Resonance Spectroscopy Aggressive behavior
Medical pathologist Aggressive behavior
5-Hydroxyindoleacetic acid measurement Aggressive behavior
Cholesterol measurement test Aggressive behavior
Activated clotting time measurement Aggressive behavior
Neuroimaging Aggressive behavior
therapist Aggressive behavior
Antigen assay Aggressive behavior
Biopsy of prostate Aggressive behavior
X-Ray Computed Tomography Aggressive behavior
Medical Imaging Aggressive behavior
Scanning Aggressive behavior
Staff Aggressive behavior
Mini-mental state examination Aggressive behavior
Calculation Aggressive behavior
Differential Diagnosis Aggressive behavior
Epinephrine measurement Aggressive behavior
Measurement of serum lipid level Aggressive behavior
Physicians Aggressive behavior
Employee Aggressive behavior
Early Diagnosis Aggressive behavior
Nurses Aggressive behavior
Microdissection Aggressive behavior
Nursing Staff Aggressive behavior
Tomography, Emission-Computed, Single-Photon Aggressive behavior
Toxicology screen, general (procedure) Aggressive behavior
Positron-Emission Tomography Aggressive behavior
laboratory studies Aggressive behavior
Scientist Aggressive behavior
Child Aggressive behavior
Cell Separation Aggressive behavior
Psychological assessment Aggressive behavior
Genotype determination Aggressive behavior
Genetic Variation Analysis Aggressive behavior
Hospital specialist Aggressive behavior
General Practitioners Aggressive behavior
Thematic Apperception Test Aggressive behavior
Immunohistochemistry Aggressive behavior
Personality Tests Aggressive behavior
Sequence Analysis Aggressive behavior
University Professor Aggressive behavior
Caregivers Aggressive behavior
DNA analysis Aggressive behavior
null Aggressive behavior
Research Personnel Aggressive behavior
Flow Cytometry Aggressive behavior
Tumor Burden Aggressive behavior
Observer Aggressive behavior
child behavior checklist Aggressive behavior
FDG-Positron Emission Tomography Aggressive behavior
Transrectal ultrasound Aggressive behavior
Neuropsychological Tests Aggressive behavior
Psychiatrist Aggressive behavior
tomography Aggressive behavior
Magnetic Resonance Imaging Aggressive behavior
angiogram Aggressive behavior
Psychometrics Aggressive behavior
Phosphorus measurement Aggressive behavior
Journalist Aggressive behavior
High sensitivity Aggressive behavior
Core needle biopsy Aggressive behavior
student Aggressive behavior
Tomography, Emission-Computed Aggressive behavior
depression scale Aggressive behavior
Tomography, Optical Aggressive behavior
Fluorescent in Situ Hybridization Aggressive behavior
Biopsy Aggressive behavior
Clinician Aggressive behavior
Assay Aggressive behavior
Soldiers Aggressive behavior
Teacher Aggressive behavior
Molecular Imaging Metaplasia
tomography Metaplasia
Histological Techniques Metaplasia
Cell Count Metaplasia
Early Diagnosis Metaplasia
Bronchoscopy Metaplasia
Gene Expression Profiling Metaplasia
Magnetic Resonance Imaging Metaplasia
Western Blotting Metaplasia
Microdissection Metaplasia
null Metaplasia
Fluorescence Bronchoscopy Metaplasia
Light Microscopy Metaplasia
Mucin-2 Staining Method Metaplasia
Mucin-1 Staining Method Metaplasia
Biopsy of stomach Metaplasia
Esophagogastroduodenoscopy Metaplasia
Periodic acid Schiff stain method Metaplasia
Endoscopy of stomach Metaplasia
Biopsy of bronchus Metaplasia
Ultrasonography Metaplasia
Biological Assay Metaplasia
Assay Metaplasia
Clinician Metaplasia
Medical pathologist Metaplasia
Excision biopsy Metaplasia
Autopsy Metaplasia
High pressure liquid chromatography procedure Metaplasia
Plain x-ray Metaplasia
Colposcopic Biopsy Metaplasia
Staining method Metaplasia
Endoscopy Metaplasia
Journalist Metaplasia
Endocervical biopsy Metaplasia
Electron Microscopy Metaplasia
Cytodiagnosis Metaplasia
Endoscopic biopsy Metaplasia
Biopsy of esophagus Metaplasia
Histocytochemistry Metaplasia
Northern Blotting Metaplasia
Microbiology procedure Metaplasia
Reverse Transcriptase Polymerase Chain Reaction Metaplasia
Radionuclide Imaging Metaplasia
Microscopy Metaplasia
Pap smear Metaplasia
Cancer Diagnosis Metaplasia
Scanning Electron Microscopy Metaplasia
Biopsy Metaplasia
Transbronchial lung biopsy Metaplasia
Immunohistochemistry Metaplasia
Laparoscopy Metaplasia
X-Rays Osseous metaplasia
Magnetic Resonance Imaging Osseous metaplasia
Biopsy Osseous metaplasia
Ultrasonography Osseous metaplasia
Microscopy Osseous metaplasia
Core needle biopsy Osseous metaplasia
Myelography Osseous metaplasia
Plain x-ray Osseous metaplasia
Electron Microscopy Skeletal muscle atrophy
Microscopy Peroxisome Proliferation
Flow Cytometry Peroxisome Proliferation
Biopsy Peroxisome Proliferation
Electron Microscopy Peroxisome Proliferation
Mutagenicity Tests Peroxisome Proliferation
High sensitivity Rumination
Manometry Rumination
student Rumination
Athletes Rumination
Professional Organization or Group Rumination
Journalist Rumination
fMRI Rumination
Testosterone measurement Muscle hypertrophy
Medical Examination Muscle hypertrophy
Neuroimaging Muscle hypertrophy
Microarray Analysis Muscle hypertrophy
Differential Diagnosis Muscle hypertrophy
Multimodal Imaging Muscle hypertrophy
Transthoracic echocardiography Muscle hypertrophy
Ultrasound examination Muscle hypertrophy
Diagnostic tests Muscle hypertrophy
Endoscopic Ultrasound Muscle hypertrophy
Weighing patient Muscle hypertrophy
Medical Imaging Muscle hypertrophy
Electromyography Muscle hypertrophy
Morphometry Muscle hypertrophy
2D Echocardiography Muscle hypertrophy
Immunocytochemistry Muscle hypertrophy
X-Ray Computed Tomography Muscle hypertrophy
Ultrasonography Muscle hypertrophy
Grip strength Muscle hypertrophy
tomography Muscle hypertrophy
Surface Electromyography Muscle hypertrophy
Magnetic Resonance Imaging Muscle hypertrophy
Scanning Muscle hypertrophy
Autopsy cardiac muscle atrophy
Journalist General Adaptation Syndrome
Differential Diagnosis General Adaptation Syndrome
null General Adaptation Syndrome
Magnetic Resonance Imaging General Adaptation Syndrome
Athletes General Adaptation Syndrome
imaging studies Muscular Atrophy
Diagnosis Muscular Atrophy
Grip strength Muscular Atrophy
Hemagglutination test Muscular Atrophy
null Muscular Atrophy
Dual-Energy X-Ray Absorptiometry Muscular Atrophy
Evoked Potentials, Motor Muscular Atrophy
Scanning Muscular Atrophy
Computed Tomography Angiography Muscular Atrophy
Cell Culture Techniques Muscular Atrophy
Western Blot Muscular Atrophy
X-Rays Muscular Atrophy
Cell Count Muscular Atrophy
Weighing patient Muscular Atrophy
Spectrometry Muscular Atrophy
Electron Spin Resonance Spectroscopy Muscular Atrophy
Gene Expression Profiling Muscular Atrophy
Magnetic resonance imaging of brain and brain stem Muscular Atrophy
Ultrasonography Muscular Atrophy
Serologic tests Muscular Atrophy
Immunoblotting Muscular Atrophy
Calcium measurement Muscular Atrophy
Forced expiratory volume procedure Muscular Atrophy
Microscopy Muscular Atrophy
Electroencephalography Muscular Atrophy
Assay Muscular Atrophy
Journalist Muscular Atrophy
Asthenia Muscular Atrophy
Impaired exercise tolerance Muscular Atrophy
Transmission Electron Microscopy Muscular Atrophy
D-lactate measurement Muscular Atrophy
Muscle biopsy Muscular Atrophy
Growth hormone measurement Muscular Atrophy
Physical Examination Muscular Atrophy
tomography Muscular Atrophy
Biologic Preservation Muscular Atrophy
Biopsy Muscular Atrophy
Autopsy Muscular Atrophy
Electron Microscopy Muscular Atrophy
Histocytochemistry Muscular Atrophy
Electromyography Muscular Atrophy
Neurologic Examination Muscular Atrophy
Mass Spectrometry Muscular Atrophy
Electrophoresis, Gel, Two-Dimensional Muscular Atrophy
Western Blotting Muscular Atrophy
Magnetic Resonance Imaging Muscular Atrophy
Medical Imaging Muscular Atrophy
Electric stimulation technique Muscular Atrophy
Superficial biopsy Autolysis
Pancreas.FNA Autolysis
Gene Expression Profiling Autolysis
Magnetic Resonance Imaging Autolysis
Scanning Electron Microscopy Autolysis
Morphometry Autolysis
Polymerase chain reaction analysis Autolysis
Mass Spectrometry Autolysis
American College of Physicians Autolysis
Minimum Inhibitory Concentration measurement Autolysis
Bone marrow biopsy Autolysis
Protein Sequence Determination Autolysis
Assay Autolysis
Warthin-Starry stain method Autolysis
Paper Chromatography (procedure) Autolysis
Electrophoresis Autolysis
Gel Chromatography Autolysis
Autopsy Autolysis
Sds-page Autolysis
purification aspects Autolysis
Cell Count invasive growth
tomography invasive growth
High Resolution Computed Tomography invasive growth
Magnetic Resonance Imaging invasive growth
Mucin-2 Staining Method invasive growth
Microtomy invasive growth
Microscopy invasive growth
In Situ Hybridization invasive growth
Chromatography, Gas-Liquid invasive growth
null invasive growth
Electron Microscopy invasive growth
Blood culture invasive growth
Light Microscopy invasive growth
Smooth Muscle Actin Staining Method invasive growth
Biopsy invasive growth
Autopsy invasive growth
Electrophoresis, Gel, Pulsed-Field Chromosome Breakage
Comet Assay Chromosome Breakage
laboratory studies Chromosome Breakage
In Situ Hybridization Chromosome Breakage
Assay Chromosome Breakage
Coculture Techniques Chromosome Breakage
Micronucleus Tests Chromosome Breakage
Fluorescent in Situ Hybridization Chromosome Breakage
Chromosome analysis Chromosome Breakage
Cytogenetic Analysis Chromosome Breakage
Acoustic Evoked Brain Stem Potentials Cellular Stress Response
Electrophoretic Mobility Shift Assay Cellular Stress Response
Immunoprecipitation Cellular Stress Response
Activated clotting time measurement Cellular Stress Response
Genetic Variation Analysis Cellular Stress Response
Microarray Analysis Cellular Stress Response
Mass Spectrometry Cellular Stress Response
Flocculation Assay Cellular Stress Response
Assay Mismatch Repair
Electron Microscopy Enamel Formation (finding)
Light Microscopy Enamel Formation (finding)
Mass Spectrometry Immunity, Innate
Journalist Immunity, Innate
Viral load measurement Immunity, Innate
Lymphocyte subset measurement Immunity, Innate
Assay Immunity, Innate
Gene Expression Profiling Immunity, Innate
Professional Organization or Group Immunity, Innate
Polymerase Chain Reaction Immunity, Innate
Activated clotting time measurement Immunity, Innate
Microarray Analysis Immunity, Innate
Research Personnel Immunity, Innate
Blood typing procedure Immunity, Innate
Chloride measurement Immunity, Innate
Enzyme-Linked Immunosorbent Assay Immunity, Innate
Mucin-2 Staining Method Immunity, Innate
Esophagogastroduodenoscopy Necrosis
null Necrosis
Image analysis (procedure) Necrosis
Immunofluorescence assay Necrosis
Excision biopsy Necrosis
Medical pathologist Necrosis
Enzyme-Linked Immunosorbent Assay Necrosis
Perfusion Magnetic Resonance Imaging Necrosis
Dye test Necrosis
Laminin Staining Method Necrosis
Echocardiography, Doppler Necrosis
Diagnostic Imaging Necrosis
Biopsy of jejunum Necrosis
Early Diagnosis Necrosis
Oral Examination Necrosis
Ultrasonography of abdomen Necrosis
Cytology examination Necrosis
Enteroscopy Necrosis
Functional assessment Necrosis
radiologist Necrosis
Computed Tomography Angiography Necrosis
Vitamin measurement Necrosis
High Resolution Computed Tomography Necrosis
Western Blotting Necrosis
Percussion Necrosis
Chest CT Necrosis
Thermometry Necrosis
CD4 Count determination procedure Necrosis
Haemoconcentration Necrosis
Hematocrit procedure Necrosis
Hemaglutination Inhibition Necrosis
Giemsa stain method Necrosis
Plain x-ray Necrosis
Darkfield microscopy Necrosis
Electroporation Necrosis
null Necrosis
Retroperitoneal lymph node dissection Necrosis
null Necrosis
Physicians Necrosis
Biopsy of testis Necrosis
Fluorescence Angiography Necrosis
Radiography, Abdominal Necrosis
Pap smear Necrosis
saramsey commented 2 years ago

From this Cypher query (against KG2.7.4pre Neo4j server):

match (n)-[r:`biolink:biomarker_for` {original_predicate: 'SEMMEDDB:diagnoses'}]->(m) return distinct n.category, m.category, count(*) as c order by c desc;

we get the following results (note that your browser window may need to be wide in order to see the numeric column on the right):

n.category m.category c
"biolink:Procedure" "biolink:Disease" 177684
"biolink:Procedure" "biolink:DiseaseOrPhenotypicFeature" 28042
"biolink:Cohort" "biolink:Disease" 20671
"biolink:Procedure" "biolink:NamedThing" 8934
"biolink:NamedThing" "biolink:Disease" 7347
"biolink:Procedure" "biolink:OrganismTaxon" 7049
"biolink:Procedure" "biolink:PhenotypicFeature" 3665
"biolink:Activity" "biolink:Disease" 2230
"biolink:PhenotypicFeature" "biolink:Disease" 1715
"biolink:Cohort" "biolink:PhenotypicFeature" 1510
"biolink:Procedure" "biolink:BiologicalEntity" 1171
"biolink:NamedThing" "biolink:DiseaseOrPhenotypicFeature" 1072
"biolink:Procedure" "biolink:InformationContentEntity" 1043
"biolink:DiseaseOrPhenotypicFeature" "biolink:Disease" 861
"biolink:Device" "biolink:OrganismTaxon" 779
"biolink:InformationContentEntity" "biolink:Disease" 642
"biolink:Cohort" "biolink:DiseaseOrPhenotypicFeature" 637
"biolink:Cohort" "biolink:NamedThing" 570
"biolink:PopulationOfIndividualOrganisms" "biolink:Disease" 564
"biolink:Phenomenon" "biolink:Disease" 548
"biolink:Publication" "biolink:Disease" 485
"biolink:Activity" "biolink:DiseaseOrPhenotypicFeature" 426
"biolink:PhysiologicalProcess" "biolink:Disease" 406
"biolink:Procedure" "biolink:Phenomenon" 362
"biolink:Procedure" "biolink:PhysiologicalProcess" 333
"biolink:Agent" "biolink:Disease" 288
"biolink:NamedThing" "biolink:NamedThing" 268
"biolink:NamedThing" "biolink:OrganismTaxon" 257
"biolink:Disease" "biolink:Disease" 226
"biolink:NamedThing" "biolink:PhenotypicFeature" 202
"biolink:Procedure" "biolink:Procedure" 201
"biolink:Activity" "biolink:NamedThing" 115
"biolink:Procedure" "biolink:Activity" 107
"biolink:Publication" "biolink:DiseaseOrPhenotypicFeature" 106
"biolink:Procedure" "biolink:Behavior" 105
"biolink:Phenomenon" "biolink:DiseaseOrPhenotypicFeature" 94
"biolink:InformationContentEntity" "biolink:DiseaseOrPhenotypicFeature" 93
"biolink:PhysicalEntity" "biolink:OrganismTaxon" 90
"biolink:PhysiologicalProcess" "biolink:DiseaseOrPhenotypicFeature" 83
"biolink:PhysiologicalProcess" "biolink:OrganismTaxon" 78
"biolink:Procedure" "biolink:PopulationOfIndividualOrganisms" 71
"biolink:Activity" "biolink:PhenotypicFeature" 69
"biolink:Publication" "biolink:PhenotypicFeature" 69
"biolink:PhenotypicFeature" "biolink:NamedThing" 69
"biolink:PopulationOfIndividualOrganisms" "biolink:PhenotypicFeature" 63
"biolink:Cohort" "biolink:BiologicalEntity" 54
"biolink:Cohort" "biolink:Behavior" 53
"biolink:Procedure" "biolink:AnatomicalEntity" 52
"biolink:Device" "biolink:Disease" 51
"biolink:DiseaseOrPhenotypicFeature" "biolink:DiseaseOrPhenotypicFeature" 50
"biolink:NamedThing" "biolink:BiologicalEntity" 49
"biolink:InformationContentEntity" "biolink:PhenotypicFeature" 49
"biolink:NamedThing" "biolink:InformationContentEntity" 45
"biolink:Activity" "biolink:OrganismTaxon" 42
"biolink:PopulationOfIndividualOrganisms" "biolink:DiseaseOrPhenotypicFeature" 36
"biolink:DiseaseOrPhenotypicFeature" "biolink:NamedThing" 35
"biolink:Procedure" "biolink:GrossAnatomicalStructure" 32
"biolink:PhysiologicalProcess" "biolink:NamedThing" 32
"biolink:ChemicalEntity" "biolink:Disease" 31
"biolink:InformationContentEntity" "biolink:NamedThing" 31
"biolink:Procedure" "biolink:CellularComponent" 30
"biolink:Procedure" "biolink:Cohort" 29
"biolink:Procedure" "biolink:ChemicalEntity" 28
"biolink:PhysiologicalProcess" "biolink:PhenotypicFeature" 27
"biolink:Publication" "biolink:NamedThing" 27
"biolink:Cohort" "biolink:InformationContentEntity" 27
"biolink:Procedure" "biolink:Publication" 26
"biolink:InformationContentEntity" "biolink:OrganismTaxon" 25
"biolink:Activity" "biolink:InformationContentEntity" 24
"biolink:Phenomenon" "biolink:PhenotypicFeature" 22
"biolink:Procedure" "biolink:IndividualOrganism" 22
"biolink:NamedThing" "biolink:PhysiologicalProcess" 21
"biolink:PopulationOfIndividualOrganisms" "biolink:NamedThing" 21
"biolink:Phenomenon" "biolink:NamedThing" 21
"biolink:PhenotypicFeature" "biolink:DiseaseOrPhenotypicFeature" 20
"biolink:Activity" "biolink:BiologicalEntity" 18
"biolink:Cohort" "biolink:PhysiologicalProcess" 15
"biolink:Agent" "biolink:PhenotypicFeature" 15
"biolink:Phenomenon" "biolink:OrganismTaxon" 15
"biolink:NamedThing" "biolink:Phenomenon" 15
"biolink:InformationContentEntity" "biolink:InformationContentEntity" 13
"biolink:Disease" "biolink:DiseaseOrPhenotypicFeature" 13
"biolink:Phenomenon" "biolink:InformationContentEntity" 11
"biolink:Procedure" "biolink:Event" 11
"biolink:Agent" "biolink:DiseaseOrPhenotypicFeature" 10
"biolink:Procedure" "biolink:Cell" 9
"biolink:Device" "biolink:DiseaseOrPhenotypicFeature" 9
"biolink:ChemicalEntity" "biolink:DiseaseOrPhenotypicFeature" 8
"biolink:Procedure" "biolink:NucleicAcidEntity" 7
"biolink:InformationContentEntity" "biolink:BiologicalEntity" 7
"biolink:IndividualOrganism" "biolink:Disease" 6
"biolink:Gene" "biolink:Disease" 6
"biolink:Activity" "biolink:Phenomenon" 6
"biolink:Device" "biolink:NamedThing" 6
"biolink:Cohort" "biolink:Procedure" 6
"biolink:NamedThing" "biolink:Procedure" 6
"biolink:Disease" "biolink:NamedThing" 6
"biolink:NamedThing" "biolink:GrossAnatomicalStructure" 5
"biolink:PopulationOfIndividualOrganisms" "biolink:Behavior" 5
"biolink:NucleicAcidEntity" "biolink:Disease" 5
"biolink:Activity" "biolink:Procedure" 5
"biolink:InformationContentEntity" "biolink:Phenomenon" 5
"biolink:PhysiologicalProcess" "biolink:InformationContentEntity" 5
"biolink:Publication" "biolink:Cohort" 5
"biolink:Phenomenon" "biolink:BiologicalEntity" 5
"biolink:Activity" "biolink:Activity" 5
"biolink:NamedThing" "biolink:PopulationOfIndividualOrganisms" 5
"biolink:PhenotypicFeature" "biolink:InformationContentEntity" 5
"biolink:Cohort" "biolink:GrossAnatomicalStructure" 5
"biolink:Activity" "biolink:PhysiologicalProcess" 4
"biolink:OrganismTaxon" "biolink:Disease" 4
"biolink:ChemicalEntity" "biolink:OrganismTaxon" 4
"biolink:PhysiologicalProcess" "biolink:BiologicalEntity" 4
"biolink:NamedThing" "biolink:Activity" 4
"biolink:Activity" "biolink:Behavior" 3
"biolink:NamedThing" "biolink:Behavior" 3
"biolink:Cohort" "biolink:Phenomenon" 3
"biolink:PhysiologicalProcess" "biolink:PhysiologicalProcess" 3
"biolink:InformationContentEntity" "biolink:Behavior" 3
"biolink:Polypeptide" "biolink:Disease" 3
"biolink:AnatomicalEntity" "biolink:OrganismTaxon" 3
"biolink:DiseaseOrPhenotypicFeature" "biolink:OrganismTaxon" 3
"biolink:AnatomicalEntity" "biolink:Disease" 3
"biolink:Cohort" "biolink:IndividualOrganism" 3
"biolink:Publication" "biolink:Phenomenon" 3
"biolink:Activity" "biolink:PopulationOfIndividualOrganisms" 3
"biolink:Publication" "biolink:Activity" 3
"biolink:Agent" "biolink:NamedThing" 3
"biolink:DiseaseOrPhenotypicFeature" "biolink:Behavior" 2
"biolink:InformationContentEntity" "biolink:PhysiologicalProcess" 2
"biolink:Device" "biolink:PhenotypicFeature" 2
"biolink:DiseaseOrPhenotypicFeature" "biolink:PhenotypicFeature" 2
"biolink:Publication" "biolink:OrganismTaxon" 2
"biolink:NamedThing" "biolink:CellularComponent" 2
"biolink:NamedThing" "biolink:AnatomicalEntity" 2
"biolink:NamedThing" "biolink:Cohort" 2
"biolink:Phenomenon" "biolink:Behavior" 2
"biolink:Publication" "biolink:PhysiologicalProcess" 2
"biolink:DiseaseOrPhenotypicFeature" "biolink:InformationContentEntity" 2
"biolink:Cohort" "biolink:Activity" 2
"biolink:Disease" "biolink:Behavior" 1
"biolink:Agent" "biolink:Behavior" 1
"biolink:Publication" "biolink:Behavior" 1
"biolink:PopulationOfIndividualOrganisms" "biolink:Phenomenon" 1
"biolink:DiseaseOrPhenotypicFeature" "biolink:PhysiologicalProcess" 1
"biolink:PopulationOfIndividualOrganisms" "biolink:PhysiologicalProcess" 1
"biolink:Disease" "biolink:PhenotypicFeature" 1
"biolink:AnatomicalEntity" "biolink:DiseaseOrPhenotypicFeature" 1
"biolink:Phenomenon" "biolink:Phenomenon" 1
"biolink:Device" "biolink:ChemicalEntity" 1
"biolink:InformationContentEntity" "biolink:CellularComponent" 1
"biolink:Activity" "biolink:AnatomicalEntity" 1
"biolink:Phenomenon" "biolink:AnatomicalEntity" 1
"biolink:Cohort" "biolink:AnatomicalEntity" 1
"biolink:InformationContentEntity" "biolink:AnatomicalEntity" 1
"biolink:Phenomenon" "biolink:Cohort" 1
"biolink:PhysiologicalProcess" "biolink:Cohort" 1
"biolink:Phenomenon" "biolink:PhysiologicalProcess" 1
"biolink:Device" "biolink:PhysiologicalProcess" 1
"biolink:PhysiologicalProcess" "biolink:Phenomenon" 1
"biolink:PhysiologicalProcess" "biolink:Behavior" 1
"biolink:NamedThing" "biolink:NucleicAcidEntity" 1
"biolink:Cohort" "biolink:NucleicAcidEntity" 1
"biolink:Publication" "biolink:PopulationOfIndividualOrganisms" 1
"biolink:Phenomenon" "biolink:PopulationOfIndividualOrganisms" 1
"biolink:Agent" "biolink:InformationContentEntity" 1
"biolink:PopulationOfIndividualOrganisms" "biolink:GrossAnatomicalStructure" 1
"biolink:Phenomenon" "biolink:GrossAnatomicalStructure" 1
"biolink:InformationContentEntity" "biolink:Activity" 1
"biolink:DiseaseOrPhenotypicFeature" "biolink:BiologicalEntity" 1
"biolink:Publication" "biolink:InformationContentEntity" 1
"biolink:ChemicalEntity" "biolink:NamedThing" 1
saramsey commented 2 years ago

I have logged an issue in the Biolink GitHub project, to request that the relation mapping be updated so that SEMMEDDB:diagnoses would map to biolink:diagnoses.

https://github.com/biolink/biolink-model/issues/942

saramsey commented 1 year ago

So this has been fixed in both Biolink and in RTX-KG2. Closing it out.