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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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Error in setup requirements SPARQLWrapper #227

Closed acevedol closed 2 years ago

acevedol commented 2 years ago

Error in setup

ERROR: Cannot install -r /home/ubuntu/kg2-code/requirements-kg2-build.txt (line 24), -r /home/ubuntu/kg2-code/requirements-kg2-build.txt (line 32), SPARQLWrapper==1.8.4 and ontobio because these package versions have conflicting dependencies.

The conflict is caused by:
    The user requested SPARQLWrapper==1.8.4
    kgx 1.5.4 depends on SPARQLWrapper>=1.8.2
    ontobio 2.8.0 depends on SPARQLWrapper>=1.8.0
    pyshex 0.8.1 depends on sparqlwrapper>=1.8.5
    The user requested SPARQLWrapper==1.8.4
    kgx 1.5.4 depends on SPARQLWrapper>=1.8.2
    ontobio 2.8.0 depends on SPARQLWrapper>=1.8.0
    pyshex 0.8.0 depends on sparqlwrapper>=1.8.5
    The user requested SPARQLWrapper==1.8.4
    kgx 1.5.4 depends on SPARQLWrapper>=1.8.2
    ontobio 2.8.0 depends on SPARQLWrapper>=1.8.0
    pyshex 0.7.20 depends on sparqlwrapper>=1.8.5

Originally posted by @acevedol in https://github.com/RTXteam/RTX-KG2/issues/226#issuecomment-1215250850 Build issue