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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
39 stars 8 forks source link

Error in rule DGIdb_Conversion: #235

Closed acevedol closed 2 years ago

acevedol commented 2 years ago

Error in rule DGIdb_Conversion: jobid: 14 output: /home/ubuntu/kg2-build/kg2-dgidb.json log: /home/ubuntu/kg2-build/dgidb/dgidb-tsv-to-kg-json-stderr.log (check log file(s) for erro r message) shell: /home/ubuntu/kg2-venv/bin/python3 -u /home/ubuntu/kg2-code/dgidb_tsv_to_kg_json.py /home /ubuntu/kg2-build/dgidb/interactions.tsv /home/ubuntu/kg2-build/kg2-dgidb.json > /home/ubuntu/kg2 -build/dgidb/dgidb-tsv-to-kg-json-stderr.log 2>&1 (exited with non-zero exit code)

Originally posted by @acevedol in https://github.com/RTXteam/RTX-KG2/issues/226#issuecomment-1238446849