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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
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Non-breaking error in Rule Ontologies and TTL #274

Open acevedol opened 1 year ago

acevedol commented 1 year ago

In build-multi-ont-kg.log a bunch of these errors pop up but don't exit. Making note to look into this

2023-05-18 22:59:42,583 ERROR org.semanticweb.owlapi.util.OWLAnnotationPropertyTransformer - Attempt to transform an axiom to correct misuse of properties failed. Property replacement: {http://purl.bioontology.org/ontology/PSY/RN=http://purl.bioontology.org/ontology/PSY/RN}, axiom: AnnotationAssertion(http://purl.bioontology.org/ontology/PSY/RN http://purl.bioontology.org/ontology/PSY/27280 http://purl.bioontology.org/ontology/PSY/12437), error: class org.semanticweb.owlapi.model.IRI cannot be cast to class org.semanticweb.owlapi.model.OWLLiteral (org.semanticweb.owlapi.model.IRI and org.semanticweb.owlapi.model.OWLLiteral are in unnamed module of loader 'app')

saramsey commented 1 year ago

Are these all from the PSY ontology or from others as well?