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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
39 stars 8 forks source link

DGIdb Extract is Failing #290

Closed ecwood closed 1 year ago

ecwood commented 1 year ago

This line in the DGIdb extract is failing:

${curl_get} http://www.dgidb.org/downloads | grep -m 1 'interactions.tsv' | sed 's:<td><a href="\(.*\)">.*</a></td>:\1:'

This is failing because the curl command cannot reach that link. I ran into this on kg2erica.rtx.ai while working on #262, trying to generate some test files, so it may be related to that but I'm struggling to reach http://www.dgidb.org/downloads on my end as well.

ecwood commented 1 year ago

It looks like this was just because the website was down. However, it hasn't been updated in over a year and their twitter (which posted frequently at one point) hasn't been active in over two years. We might want to consider whether this is still a good source to include.

ecwood commented 1 year ago

I am closing because this worked in KG2.8.4pre's build.