Broken links in RTX-KG2 results

[dkoslicki]

See this issue: https://github.com/NCATSTranslator/Feedback/issues/497

Basically, there is a trailing } in one of the urls

I don't know if this is due to what's stored in RTX-KG2, or if the UI is parsing the info incorrectly. I do know it's an ARAX/RTX-KG2 edge though, as I had selected the check box to only return results from those ARA/KPs

[ecwood]

When I ran match (n)-[e]-(m) where n.name="Flutamide" and m.name="congenital adrenal hyperplasia" return n,e,m on kg2canonicalized2.rtx.ai, none of the results contain anything about clinical trials:

Edge 1:

{
  "predicate": "biolink:treats",
  "primary_knowledge_source": "infores:chembl",
  "domain_range_exclusion": "False",
  "publications_info": "{}",
  "kg2_ids": [
    "CHEMBL.COMPOUND:CHEMBL806---biolink:treats---None---None---None---MESH:D000312---identifiers_org_registry:chembl.compound"
  ],
  "subject": "PUBCHEM.COMPOUND:3397",
  "id": "30382301",
  "object": "MONDO:0018479"
}

Edge 2:

{
  "predicate": "biolink:treats",
  "primary_knowledge_source": "infores:semmeddb",
  "domain_range_exclusion": "False",
  "publications_info": "{'PMID:10720048': {'publication date': '2000 Mar', 'sentence': 'We conclude that the regimen of flutamide, testolactone, reduced hydrocortisone dose, and fludrocortisone provides effective control of congenital adrenal hyperplasia with reduced risk of glucocorticoid excess.', 'subject score': 1000, 'object score': 1000}, 'PMID:8855797': {'publication date': '1996 Oct', 'sentence': 'A preliminary study of flutamide, testolactone, and reduced hydrocortisone dose in the treatment of congenital adrenal hyperplasia.', 'subject score': 1000, 'object score': 1000}}",
  "kg2_ids": [
    "UMLS:C0016384---SEMMEDDB:treats---None---None---None---UMLS:C0001627---SEMMEDDB:"
  ],
  "subject": "PUBCHEM.COMPOUND:3397",
  "id": "8061436",
  "object": "MONDO:0018479",
  "publications": [
    "PMID:10720048",
    "PMID:8855797"
  ]
}

I don't believe KG2pre ingests any clinical trials data, so I'm not sure where this data could be coming from.