Open ecwood opened 10 months ago
Source predicate curie is missing from the YAML config file: ORPHANET:C057
Source predicate curie is missing from the YAML config file: RO:0002428
Source predicate curie is missing from the YAML config file: ORPHANET:C056
Source predicate curie is missing from the YAML config file: DrugCentral:reduce_risk
@acevedol Looks like some of the checkboxes could be checked here (e.g., Neo4j endpoint); can we please get a status refresh on the checklist? Thanks.
1. Build and load KG2:
bash -x clear-instance.sh
git clone https://github.com/RTXteam/RTX-KG2.git
bash -x RTX-KG2/setup-kg2-build.sh
~/kg2-build/setup-kg2-build.log
to ensure setup completed successfullybash -x ~/kg2-code/build-kg2-snakemake.sh all -F -n
~/kg2-build/build-kg2-snakemake-n.log
to ensure all rules are includedtouch ~/kg2-build/minor-release
for a minor release ortouch ~/kg2-build/major-release
for a major release. If you don't want to change the version number, ignore this step.screen -S buildkg2
bash -x ~/kg2-code/build-kg2-snakemake.sh all -F
~/kg2-build/build-kg2-snakemake.log
~/kg2-build/kg2-version.txt
kg2-simplified-report.json
; compare against previouskg2-simplified-report.json
to identify any major changespython3 kg2_json_to_kgx_tsv.py kg2-simplified.json
content-metadata.json
on build instanceaws s3 /file/name s3://rtx-kg2-public
rtx.ai
underNetworking
on LightsailRTX-KG2/tsv-to-neo4j.sh > ~/kg2-build/tsv-to-neo4j.log 2>&1
kg2-versions.md
(see Cypher command below).Example Cypher to get versions of many of the knowledge sources in a specific build of KG2pre: