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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
39 stars 8 forks source link

can we make all update_date fields ISO 8601 format? #35

Open saramsey opened 4 years ago

ecwood commented 4 years ago

To learn what all we will have to change, I ran the following on kg2endpoint3 in a python script: image

And received the following output:

Source Example Date
OBO:chebi.owl 2020-07-21 20:52:13 GMT
identifiers_org_registry:ensembl 2019-03
OBO:genepio.owl 2020-07-21 21:14:01 GMT
OBO:ddanat.owl 2020-07-21 20:29:47 GMT
umls_source:LNC 2018
identifiers_org_registry:drugbank 2020-03-01
identifiers_org_registry:chembl 2018-12-10
UMLS_STY: 2018
OBO:hp.owl 2020-07-21 21:00:29 GMT
umls_source:FMA 2020-07-21 20:28:41 GMT
umls_source:ICD9CM 2005
biolink_download_source:biolink-model.owl Mon Jul 13 19:41:52 2020
PathWhiz: 2019-08-17 07:49:10
identifiers_org_registry:reactome None
identifiers_org_registry:umls 2018
EFO:efo.owl 2020-07-21 21:02:07 GMT
identifiers_org_registry:chembl.compound None
identifiers_org_registry:kegg.compound None
umls_source:SNOMEDCT 2017
OBO:pato.owl 2020-07-21 21:01:51 GMT
identifiers_org_registry:ncbigene 20200607
umls_source:ICD10AE 1998
RTX: 2020-07-25 13:31
umls_source:RXNORM 2018
OBO:ro.owl 2020-07-21 20:26:12 GMT
GTPI_source 2018-01-25
umls_source:DRUGBANK 2020-03-02
umls_source:HL7 2017
identifiers_org_registry:hmdb 2019-01-11 19:16:06 UTC
umls_source:MEDDRA 2018
umls_source:HPO 2020-07-21 21:00:29 GMT
OMIM: None
umls_source:HGNC 2020-07-21 21:05:40 GMT
OBO:uberon/ext.owl 2020-07-21 20:26:23 GMT
umls_source:VANDF 2018
identifiers_org_registry:ttd.target 2018-01-25
identifiers_org_registry:uniprot 17-JUN-2020
umls_source:GO 2020-07-21 20:24:20 GMT
HP:hp.owl None
umls_source:NCI 2018
OBO:mondo.owl 2020-07-21 21:02:07 GMT
REPODB: 1571955991
OBO:go/extensions/go-plus.owl 2020-07-21 20:24:20 GMT
OBO:foodon.owl 2020-07-21 20:57:43 GMT
OBO:pr.owl 2020-07-21 21:05:40 GMT
OBO:ncbitaxon/subsets/taxslim.owl 2020-07-21 21:01:32 GMT
umls_source:MSH 2015
umls_source:ICD10PCS 2018
SEMMEDDB: 2019-03-26 19:15:35
umls_source:MEDLINEPLUS 2017
ORPHANET: 2020-07-21 21:02:07 GMT
umls_source:NDFRT 2018
umls_source:NCBITAXON 2018
identifiers_org_registry:smpdb 2019-08-16 01:47:32
umls_source:HCPCS 2018
umls_source:ICD10CM 2018
umls_source:ATC 2018
OBO:cl.owl 2020-07-21 20:29:51 GMT
umls_source:NDDF 2018
umls_source:MTH 2018
umls_source:OMIM 2018
umls_source:PDQ 2007
OBO:ino.owl 10112
DOID:doid.owl None
OBO:doid.owl 2020-07-21 21:04:17 GMT
OBO:bfo.owl 2020-07-21 20:24:11 GMT
OBO:bspo.owl 2020-07-21 21:00:24 GMT
umls_source:CPT 2005
umls_source:MED-RT 2018
umls_source:ICD10 1998
OBO:ehdaa2.owl 2020-07-21 21:00:14 GMT
OBO:nbo.owl 2020-07-21 21:01:19 GMT
OBO:fma.owl 2020-07-21 20:28:41 GMT
umls_source:HCPT 2018