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RTXteam / RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
MIT License
38 stars 8 forks source link

Code Cleanup #399

Open ecwood opened 4 months ago

ecwood commented 4 months ago

Just like with #390, there are lines of code that are no longer relevant or up to date.

ecwood commented 4 months ago

I am considering removing the knowledge_type field from kg2-provided-by-curie-to-infores-curie.yaml, which stemmed from #77 but have never been used (and seem out of date now that we have knowledge_level and agent_type).

ecwood commented 4 months ago

I also need to check curies-to-urls-map.yaml. It seems strangely full.

ecwood commented 4 months ago

Also included in this should be items in multi ont/kg2_util that were removed with the separate ETL of UMLS