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Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
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Are these ENSEMBL gene ids invalid ids? #1361

Closed chunyuma closed 3 years ago

chunyuma commented 3 years ago

Hi @saramsey, @kvarforl and @ericawood,

I found something strange regarding ENSEMBL genes in KG2.5.2c.

I queried match (n)-[]-(m) where n.category='biolink:Gene' and split(n.id,':')[0]='ENSEMBL' return distinct split(m.id,':')[0], count(distinct m.id) in KG2.5.2c and found that most of ENSEMBL genes are mainly connected to a limited of curies:

split(m.id,':')[0] count(distinct m.id)
"SO" 1
"PR" 108
"CHEMBL.TARGET" 7
"NCBITaxon" 6
"NCBIGene" 1
"UMLS" 1

You can see that these ENSEMBEL genes even don't have any connection with each other. When I looked into this, these ENSEMBEL genes mainly connect to those 6 NCBI Taxon curies.

In addition, in these ENSEMBEL genes, there are 75 ENSEMBL genes whose iri are invalid and I also can't even find these IDs in ENSEMBEL website:

n.id n.iri
"ENSEMBL:SAR0196" "https://identifiers.org/ensembl:SAR0196"
"ENSEMBL:SERP2474" "https://identifiers.org/ensembl:SERP2474"
"ENSEMBL:BAA35363" "https://identifiers.org/ensembl:BAA35363"
"ENSEMBL:BAA35975" "https://identifiers.org/ensembl:BAA35975"
"ENSEMBL:BAA35977" "https://identifiers.org/ensembl:BAA35977"
"ENSEMBL:SAV0195" "https://identifiers.org/ensembl:SAV0195"
"ENSEMBL:XOO0607" "https://identifiers.org/ensembl:XOO0607"
"ENSEMBL:BAB41410" "https://identifiers.org/ensembl:BAB41410"
"ENSEMBL:BAA77927" "https://identifiers.org/ensembl:BAA77927"
"ENSEMBL:BAB94034" "https://identifiers.org/ensembl:BAB94034"
"ENSEMBL:BAA22515" "https://identifiers.org/ensembl:BAA22515"
"ENSEMBL:BAA36098" "https://identifiers.org/ensembl:BAA36098"
"ENSEMBL:AT1G05760" "https://identifiers.org/ensembl:AT1G05760"
"ENSEMBL:SACOL0180" "https://identifiers.org/ensembl:SACOL0180"
"ENSEMBL:BAB96624" "https://identifiers.org/ensembl:BAB96624"
"ENSEMBL:BAA16223" "https://identifiers.org/ensembl:BAA16223"
"ENSEMBL:BAE76052" "https://identifiers.org/ensembl:BAE76052"
"ENSEMBL:BAE76028" "https://identifiers.org/ensembl:BAE76028"
"ENSEMBL:BAE76450" "https://identifiers.org/ensembl:BAE76450"
"ENSEMBL:BAA15962" "https://identifiers.org/ensembl:BAA15962"
"ENSEMBL:BAA16126" "https://identifiers.org/ensembl:BAA16126"
"ENSEMBL:BAA16125" "https://identifiers.org/ensembl:BAA16125"
"ENSEMBL:BAA16005" "https://identifiers.org/ensembl:BAA16005"
"ENSEMBL:BAA16002" "https://identifiers.org/ensembl:BAA16002"
"ENSEMBL:BAA16506" "https://identifiers.org/ensembl:BAA16506"
"ENSEMBL:BAE76930" "https://identifiers.org/ensembl:BAE76930"
"ENSEMBL:BAE76924" "https://identifiers.org/ensembl:BAE76924"
"ENSEMBL:BAE76923" "https://identifiers.org/ensembl:BAE76923"
"ENSEMBL:BAE76567" "https://identifiers.org/ensembl:BAE76567"
"ENSEMBL:BAE76566" "https://identifiers.org/ensembl:BAE76566"
"ENSEMBL:BAE76598" "https://identifiers.org/ensembl:BAE76598"
"ENSEMBL:BAA16036" "https://identifiers.org/ensembl:BAA16036"
"ENSEMBL:BAE76280" "https://identifiers.org/ensembl:BAE76280"
"ENSEMBL:BAE76418" "https://identifiers.org/ensembl:BAE76418"
"ENSEMBL:BAE76415" "https://identifiers.org/ensembl:BAE76415"
"ENSEMBL:BAE76473" "https://identifiers.org/ensembl:BAE76473"
"ENSEMBL:BAE76475" "https://identifiers.org/ensembl:BAE76475"
"ENSEMBL:BAE76474" "https://identifiers.org/ensembl:BAE76474"
"ENSEMBL:BAE76402" "https://identifiers.org/ensembl:BAE76402"
"ENSEMBL:BAE76703" "https://identifiers.org/ensembl:BAE76703"
"ENSEMBL:BAE76776" "https://identifiers.org/ensembl:BAE76776"
"ENSEMBL:BAE76696" "https://identifiers.org/ensembl:BAE76696"
"ENSEMBL:BAA14961" "https://identifiers.org/ensembl:BAA14961"
"ENSEMBL:BAE76066" "https://identifiers.org/ensembl:BAE76066"
"ENSEMBL:BAE76060" "https://identifiers.org/ensembl:BAE76060"
"ENSEMBL:BAE76370" "https://identifiers.org/ensembl:BAE76370"
"ENSEMBL:BAE76371" "https://identifiers.org/ensembl:BAE76371"
"ENSEMBL:BAE76355" "https://identifiers.org/ensembl:BAE76355"
"ENSEMBL:BAA15248" "https://identifiers.org/ensembl:BAA15248"
"ENSEMBL:BAE76338" "https://identifiers.org/ensembl:BAE76338"
"ENSEMBL:BAA15178" "https://identifiers.org/ensembl:BAA15178"
"ENSEMBL:BAA15121" "https://identifiers.org/ensembl:BAA15121"
"ENSEMBL:BAE78334" "https://identifiers.org/ensembl:BAE78334"
"ENSEMBL:BAA15252" "https://identifiers.org/ensembl:BAA15252"
"ENSEMBL:BAA15090" "https://identifiers.org/ensembl:BAA15090"
"ENSEMBL:BAA15823" "https://identifiers.org/ensembl:BAA15823"
"ENSEMBL:BAA15089" "https://identifiers.org/ensembl:BAA15089"
"ENSEMBL:BAE78086" "https://identifiers.org/ensembl:BAE78086"
"ENSEMBL:BAB75331" "https://identifiers.org/ensembl:BAB75331"
"ENSEMBL:BAB75330" "https://identifiers.org/ensembl:BAB75330"
"ENSEMBL:BAE77042" "https://identifiers.org/ensembl:BAE77042"
"ENSEMBL:BAE77031" "https://identifiers.org/ensembl:BAE77031"
"ENSEMBL:BAE77004" "https://identifiers.org/ensembl:BAE77004"
"ENSEMBL:BAE77163" "https://identifiers.org/ensembl:BAE77163"
"ENSEMBL:BAE77611" "https://identifiers.org/ensembl:BAE77611"
"ENSEMBL:BAE77516" "https://identifiers.org/ensembl:BAE77516"
"ENSEMBL:BAE77585" "https://identifiers.org/ensembl:BAE77585"
"ENSEMBL:BAE77582" "https://identifiers.org/ensembl:BAE77582"
"ENSEMBL:BAE77578" "https://identifiers.org/ensembl:BAE77578"
"ENSEMBL:BAE77577" "https://identifiers.org/ensembl:BAE77577"
"ENSEMBL:BAE77865" "https://identifiers.org/ensembl:BAE77865"
"ENSEMBL:BAE77493" "https://identifiers.org/ensembl:BAE77493"
"ENSEMBL:BAE77309" "https://identifiers.org/ensembl:BAE77309"
"ENSEMBL:BAC15292" "https://identifiers.org/ensembl:BAC15292"
"ENSEMBL:LRG_1173" "https://identifiers.org/ensembl:LRG_1173"
saramsey commented 3 years ago

These appear to all be bacterial genes that came in via the Protein Ontology (pr.owl).

saramsey commented 3 years ago

These appear to be accession numbers in the Ensembl Bacteria database

https://bacteria.ensembl.org/Staphylococcus_aureus_subsp_aureus_n315_gca_000009645/Gene/Summary?g=BAB41410;r=Chromosome:222427-225216;t=BAB41410;db=core

Screen Shot 2021-04-09 at 4 26 13 PM
chunyuma commented 3 years ago

Ah, I see, thanks @saramsey!

chunyuma commented 3 years ago

This question has been solved. I'll go to close this issue. Thanks @saramsey!

saramsey commented 3 years ago

I'm not sure that there is a clean way to represent the KS URIs for these genes, with a CURIE. Ensembl Bacteria (most unfortunately) encodes the species name in the base URI, like this. For the accession number XOO0607, the URI is https://bacteria.ensembl.org/Xanthomonas_oryzae_pv_oryzae_kacc_10331_gca_000007385/Gene/Summary?g=XOO0607;r=Chromosome:634770-636098;t=AAW73861;db=core

saramsey commented 3 years ago

Second bummer-- identifiers.org has a registry for Ensembl Bacteria, but its CURIE IDs don't seem to be based on the accession IDs that we are getting from pr.owl.

chunyuma commented 3 years ago

This makes sense why iri is invalid for these genes.

ecwood commented 3 years ago

Actually, I think there might be a way to fix this based on what we've learned from #1366.

For 73 out of 75 these, the EnsemblGenome base IRI (www.ensemblgenomes.org/id/) works with these ids:

Row Original ID Original IRI New IRI Resolves?
1 "ENSEMBL:SAR0196" "https://identifiers.org/ensembl:SAR0196" www.ensemblgenomes.org/id/SAR0196 No
2 "ENSEMBL:SERP2474" "https://identifiers.org/ensembl:SERP2474" www.ensemblgenomes.org/id/SERP2474 Yes
3 "ENSEMBL:BAA35363" "https://identifiers.org/ensembl:BAA35363" www.ensemblgenomes.org/id/BAA35363 Yes
4 "ENSEMBL:BAA35975" "https://identifiers.org/ensembl:BAA35975" www.ensemblgenomes.org/id/BAA35975 Yes
5 "ENSEMBL:BAA35977" "https://identifiers.org/ensembl:BAA35977" www.ensemblgenomes.org/id/BAA35977 Yes
6 "ENSEMBL:SAV0195" "https://identifiers.org/ensembl:SAV0195" www.ensemblgenomes.org/id/SAV0195 Yes
7 "ENSEMBL:XOO0607" "https://identifiers.org/ensembl:XOO0607" www.ensemblgenomes.org/id/XOO0607 Yes
8 "ENSEMBL:BAB41410" "https://identifiers.org/ensembl:BAB41410" www.ensemblgenomes.org/id/BAB41410 Yes
9 "ENSEMBL:BAA77927" "https://identifiers.org/ensembl:BAA77927" www.ensemblgenomes.org/id/BAA77927 Yes
10 "ENSEMBL:BAB94034" "https://identifiers.org/ensembl:BAB94034" www.ensemblgenomes.org/id/BAB94034 Yes
11 "ENSEMBL:BAA22515" "https://identifiers.org/ensembl:BAA22515" www.ensemblgenomes.org/id/BAA22515 Yes
12 "ENSEMBL:BAA36098" "https://identifiers.org/ensembl:BAA36098" www.ensemblgenomes.org/id/BAA36098 Yes
13 "ENSEMBL:AT1G05760" "https://identifiers.org/ensembl:AT1G05760" www.ensemblgenomes.org/id/AT1G05760 Yes
14 "ENSEMBL:SACOL0180" "https://identifiers.org/ensembl:SACOL0180" www.ensemblgenomes.org/id/SACOL0180 Yes
15 "ENSEMBL:BAB96624" "https://identifiers.org/ensembl:BAB96624" www.ensemblgenomes.org/id/BAB96624 Yes
16 "ENSEMBL:BAA16223" "https://identifiers.org/ensembl:BAA16223" www.ensemblgenomes.org/id/BAA16223 Yes
17 "ENSEMBL:BAE76052" "https://identifiers.org/ensembl:BAE76052" www.ensemblgenomes.org/id/BAE76052 Yes
18 "ENSEMBL:BAE76028" "https://identifiers.org/ensembl:BAE76028" www.ensemblgenomes.org/id/BAE76028 Yes
19 "ENSEMBL:BAE76450" "https://identifiers.org/ensembl:BAE76450" www.ensemblgenomes.org/id/BAE76450 Yes
20 "ENSEMBL:BAA15962" "https://identifiers.org/ensembl:BAA15962" www.ensemblgenomes.org/id/BAA15962 Yes
21 "ENSEMBL:BAA16126" "https://identifiers.org/ensembl:BAA16126" www.ensemblgenomes.org/id/BAA16126 Yes
22 "ENSEMBL:BAA16125" "https://identifiers.org/ensembl:BAA16125" www.ensemblgenomes.org/id/BAA16125 Yes
23 "ENSEMBL:BAA16005" "https://identifiers.org/ensembl:BAA16005" www.ensemblgenomes.org/id/BAA16005 Yes
24 "ENSEMBL:BAA16002" "https://identifiers.org/ensembl:BAA16002" www.ensemblgenomes.org/id/BAA16002 Yes
25 "ENSEMBL:BAA16506" "https://identifiers.org/ensembl:BAA16506" www.ensemblgenomes.org/id/BAA16506 Yes
26 "ENSEMBL:BAE76930" "https://identifiers.org/ensembl:BAE76930" www.ensemblgenomes.org/id/BAE76930 Yes
27 "ENSEMBL:BAE76924" "https://identifiers.org/ensembl:BAE76924" www.ensemblgenomes.org/id/BAE76924 Yes
28 "ENSEMBL:BAE76923" "https://identifiers.org/ensembl:BAE76923" www.ensemblgenomes.org/id/BAE76923 Yes
29 "ENSEMBL:BAE76567" "https://identifiers.org/ensembl:BAE76567" www.ensemblgenomes.org/id/BAE76567 Yes
30 "ENSEMBL:BAE76566" "https://identifiers.org/ensembl:BAE76566" www.ensemblgenomes.org/id/BAE76566 Yes
31 "ENSEMBL:BAE76598" "https://identifiers.org/ensembl:BAE76598" www.ensemblgenomes.org/id/BAE76598 Yes
32 "ENSEMBL:BAA16036" "https://identifiers.org/ensembl:BAA16036" www.ensemblgenomes.org/id/BAA16036 Yes
33 "ENSEMBL:BAE76280" "https://identifiers.org/ensembl:BAE76280" www.ensemblgenomes.org/id/BAE76280 Yes
34 "ENSEMBL:BAE76418" "https://identifiers.org/ensembl:BAE76418" www.ensemblgenomes.org/id/BAE76418 Yes
35 "ENSEMBL:BAE76415" "https://identifiers.org/ensembl:BAE76415" www.ensemblgenomes.org/id/BAE76415 Yes
36 "ENSEMBL:BAE76473" "https://identifiers.org/ensembl:BAE76473" www.ensemblgenomes.org/id/BAE76473 Yes
37 "ENSEMBL:BAE76475" "https://identifiers.org/ensembl:BAE76475" www.ensemblgenomes.org/id/BAE76475 Yes
38 "ENSEMBL:BAE76474" "https://identifiers.org/ensembl:BAE76474" www.ensemblgenomes.org/id/BAE76474 Yes
39 "ENSEMBL:BAE76402" "https://identifiers.org/ensembl:BAE76402" www.ensemblgenomes.org/id/BAE76402 Yes
40 "ENSEMBL:BAE76703" "https://identifiers.org/ensembl:BAE76703" www.ensemblgenomes.org/id/BAE76703 Yes
41 "ENSEMBL:BAE76776" "https://identifiers.org/ensembl:BAE76776" www.ensemblgenomes.org/id/BAE76776 Yes
42 "ENSEMBL:BAE76696" "https://identifiers.org/ensembl:BAE76696" www.ensemblgenomes.org/id/BAE76696 Yes
43 "ENSEMBL:BAA14961" "https://identifiers.org/ensembl:BAA14961" www.ensemblgenomes.org/id/BAA14961 Yes
44 "ENSEMBL:BAE76066" "https://identifiers.org/ensembl:BAE76066" www.ensemblgenomes.org/id/BAE76066 Yes
45 "ENSEMBL:BAE76060" "https://identifiers.org/ensembl:BAE76060" www.ensemblgenomes.org/id/BAE76060 Yes
46 "ENSEMBL:BAE76370" "https://identifiers.org/ensembl:BAE76370" www.ensemblgenomes.org/id/BAE76370 Yes
47 "ENSEMBL:BAE76371" "https://identifiers.org/ensembl:BAE76371" www.ensemblgenomes.org/id/BAE76371 Yes
48 "ENSEMBL:BAE76355" "https://identifiers.org/ensembl:BAE76355" www.ensemblgenomes.org/id/BAE76355 Yes
49 "ENSEMBL:BAA15248" "https://identifiers.org/ensembl:BAA15248" www.ensemblgenomes.org/id/BAA15248 Yes
50 "ENSEMBL:BAE76338" "https://identifiers.org/ensembl:BAE76338" www.ensemblgenomes.org/id/BAE76338 Yes
51 "ENSEMBL:BAA15178" "https://identifiers.org/ensembl:BAA15178" www.ensemblgenomes.org/id/BAA15178 Yes
52 "ENSEMBL:BAA15121" "https://identifiers.org/ensembl:BAA15121" www.ensemblgenomes.org/id/BAA15121 Yes
53 "ENSEMBL:BAE78334" "https://identifiers.org/ensembl:BAE78334" www.ensemblgenomes.org/id/BAE78334 Yes
54 "ENSEMBL:BAA15252" "https://identifiers.org/ensembl:BAA15252" www.ensemblgenomes.org/id/BAA15252 Yes
55 "ENSEMBL:BAA15090" "https://identifiers.org/ensembl:BAA15090" www.ensemblgenomes.org/id/BAA15090 Yes
56 "ENSEMBL:BAA15823" "https://identifiers.org/ensembl:BAA15823" www.ensemblgenomes.org/id/BAA15823 Yes
57 "ENSEMBL:BAA15089" "https://identifiers.org/ensembl:BAA15089" www.ensemblgenomes.org/id/BAA15089 Yes
58 "ENSEMBL:BAE78086" "https://identifiers.org/ensembl:BAE78086" www.ensemblgenomes.org/id/BAE78086 Yes
59 "ENSEMBL:BAB75331" "https://identifiers.org/ensembl:BAB75331" www.ensemblgenomes.org/id/BAB75331 Yes
60 "ENSEMBL:BAB75330" "https://identifiers.org/ensembl:BAB75330" www.ensemblgenomes.org/id/BAB75330 Yes
61 "ENSEMBL:BAE77042" "https://identifiers.org/ensembl:BAE77042" www.ensemblgenomes.org/id/BAE77042 Yes
62 "ENSEMBL:BAE77031" "https://identifiers.org/ensembl:BAE77031" www.ensemblgenomes.org/id/BAE77031 Yes
63 "ENSEMBL:BAE77004" "https://identifiers.org/ensembl:BAE77004" www.ensemblgenomes.org/id/BAE77004 Yes
64 "ENSEMBL:BAE77163" "https://identifiers.org/ensembl:BAE77163" www.ensemblgenomes.org/id/BAE77163 Yes
65 "ENSEMBL:BAE77611" "https://identifiers.org/ensembl:BAE77611" www.ensemblgenomes.org/id/BAE77611 Yes
66 "ENSEMBL:BAE77516" "https://identifiers.org/ensembl:BAE77516" www.ensemblgenomes.org/id/BAE77516 Yes
67 "ENSEMBL:BAE77585" "https://identifiers.org/ensembl:BAE77585" www.ensemblgenomes.org/id/BAE77585 Yes
68 "ENSEMBL:BAE77582" "https://identifiers.org/ensembl:BAE77582" www.ensemblgenomes.org/id/BAE77582 Yes
69 "ENSEMBL:BAE77578" "https://identifiers.org/ensembl:BAE77578" www.ensemblgenomes.org/id/BAE77578 Yes
70 "ENSEMBL:BAE77577" "https://identifiers.org/ensembl:BAE77577" www.ensemblgenomes.org/id/BAE77577 Yes
71 "ENSEMBL:BAE77865" "https://identifiers.org/ensembl:BAE77865" www.ensemblgenomes.org/id/BAE77865 Yes
72 "ENSEMBL:BAE77493" "https://identifiers.org/ensembl:BAE77493" www.ensemblgenomes.org/id/BAE77493 Yes
73 "ENSEMBL:BAE77309" "https://identifiers.org/ensembl:BAE77309" www.ensemblgenomes.org/id/BAE77309 Yes
74 "ENSEMBL:BAC15292" "https://identifiers.org/ensembl:BAC15292" www.ensemblgenomes.org/id/BAC15292 Yes
75 "ENSEMBL:LRG_1173" "https://identifiers.org/ensembl:LRG_1173" www.ensemblgenomes.org/id/LRG_1173 No
ecwood commented 3 years ago

6251a33 should fix this problem, based on my testing. It uses the regex for ENSEMBL to identify nodes that pr.owl assigned as Ensembl: that are actually EnsemblGenomes: nodes. The only node from the table above that wasn't impacted by the change, as far as I can tell, is ENSEMBL:LRG_1173, but a) the change wouldn't help it and b) I could not identify where that node was coming from. A possible location for it appeared to be umls-hgnc.owl, which contains the line <LOCUS_SPECIFIC_DB_XR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">LRG_1173&amp;#x7C;http://ftp.ebi.ac.uk/pub/databases/lrgex/LRG_1173.xml</LOCUS_SPECIFIC_DB_XR> but the cypher command match (n {id: 'ENSEMBL:LRG_1173'}) return n.provided_by returns identifiers_org_registry:ensembl. I tested this code on every owl file that contained or possibly contained Ensembl IDs (only pr.owl was impacted). Those tested are:

@saramsey Does this seem okay?

saramsey commented 3 years ago

Nice work, @ericawood! Looks like a good fix.

ecwood commented 3 years ago

This appears to be as fixed as expected in KG2.6.0: (such that EnsemblGenomes:SAR0196 and ENSEMBL:LRG_1173 are still a bit funky) match (n) where split(n.id, ':')[1] in ["SAR0196", "SERP2474", "BAA35363", "BAA35975", "BAA35977", "SAV0195", "XOO0607", "BAB41410", "BAA77927", "BAB94034", "BAA22515", "BAA36098", "AT1G05760", "SACOL0180", "BAB96624", "BAA16223", "BAE76052", "BAE76028", "BAE76450", "BAA15962", "BAA16126", "BAA16125", "BAA16005", "BAA16002", "BAA16506", "BAE76930", "BAE76924", "BAE76923", "BAE76567", "BAE76566", "BAE76598", "BAA16036", "BAE76280", "BAE76418", "BAE76415", "BAE76473", "BAE76475", "BAE76474", "BAE76402", "BAE76703", "BAE76776", "BAE76696", "BAA14961", "BAE76066", "BAE76060", "BAE76370", "BAE76371", "BAE76355", "BAA15248", "BAE76338", "BAA15178", "BAA15121", "BAE78334", "BAA15252", "BAA15090", "BAA15823", "BAA15089", "BAE78086", "BAB75331", "BAB75330", "BAE77042", "BAE77031", "BAE77004", "BAE77163", "BAE77611", "BAE77516", "BAE77585", "BAE77582", "BAE77578", "BAE77577", "BAE77865", "BAE77493", "BAE77309", "BAC15292", "LRG_1173"] return n.id, n.provided_by, n.iri

n.id n.provided_by n.iri
"EnsemblGenomes:SAR0196" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/SAR0196"
"EnsemblGenomes:SERP2474" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/SERP2474"
"EnsemblGenomes:BAA35975" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA35975"
"EnsemblGenomes:BAA35977" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA35977"
"EnsemblGenomes:BAA35363" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA35363"
"EnsemblGenomes:SAV0195" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/SAV0195"
"EnsemblGenomes:XOO0607" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/XOO0607"
"EnsemblGenomes:BAB41410" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAB41410"
"EnsemblGenomes:BAA77927" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA77927"
"EnsemblGenomes:BAA36098" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA36098"
"EnsemblGenomes:BAA22515" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA22515"
"EnsemblGenomes:BAB94034" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAB94034"
"EnsemblGenomes:SACOL0180" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/SACOL0180"
"EnsemblGenomes:BAB96624" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAB96624"
"EnsemblGenomes:BAE76703" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76703"
"EnsemblGenomes:BAE76776" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76776"
"EnsemblGenomes:BAA15962" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15962"
"EnsemblGenomes:BAE76598" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76598"
"EnsemblGenomes:BAE76930" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76930"
"EnsemblGenomes:BAE76924" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76924"
"EnsemblGenomes:BAE76923" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76923"
"EnsemblGenomes:BAA16506" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16506"
"EnsemblGenomes:BAE76567" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76567"
"EnsemblGenomes:BAE76450" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76450"
"EnsemblGenomes:BAE76418" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76418"
"EnsemblGenomes:BAE76415" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76415"
"EnsemblGenomes:BAE76473" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76473"
"EnsemblGenomes:BAE76475" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76475"
"EnsemblGenomes:BAE76474" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76474"
"EnsemblGenomes:BAE76338" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76338"
"EnsemblGenomes:BAE76402" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76402"
"EnsemblGenomes:BAE76052" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76052"
"EnsemblGenomes:BAE76028" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76028"
"EnsemblGenomes:BAE76696" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76696"
"EnsemblGenomes:BAA16223" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16223"
"EnsemblGenomes:BAE76066" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76066"
"EnsemblGenomes:BAE76060" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76060"
"EnsemblGenomes:BAA16126" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16126"
"EnsemblGenomes:BAA16125" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16125"
"EnsemblGenomes:BAE76370" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76370"
"EnsemblGenomes:BAE76371" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76371"
"EnsemblGenomes:BAE76355" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76355"
"EnsemblGenomes:BAA16005" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16005"
"EnsemblGenomes:BAA16002" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16002"
"EnsemblGenomes:BAA16036" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA16036"
"EnsemblGenomes:BAE76280" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE76280"
"EnsemblGenomes:BAA14961" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA14961"
"EnsemblGenomes:BAA15178" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15178"
"EnsemblGenomes:BAA15252" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15252"
"EnsemblGenomes:BAA15248" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15248"
"EnsemblGenomes:BAA15090" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15090"
"EnsemblGenomes:BAA15823" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15823"
"EnsemblGenomes:BAE78334" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE78334"
"EnsemblGenomes:BAA15089" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAA15089"
"EnsemblGenomes:BAE78086" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE78086"
"EnsemblGenomes:BAB75331" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAB75331"
"EnsemblGenomes:BAB75330" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAB75330"
"EnsemblGenomes:BAE77004" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77004"
"EnsemblGenomes:BAE77042" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77042"
"EnsemblGenomes:BAE77031" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77031"
"EnsemblGenomes:BAE77163" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77163"
"EnsemblGenomes:BAE77309" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77309"
"EnsemblGenomes:BAE77865" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77865"
"EnsemblGenomes:BAE77493" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77493"
"EnsemblGenomes:BAE77611" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77611"
"EnsemblGenomes:BAE77585" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77585"
"EnsemblGenomes:BAE77582" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77582"
"EnsemblGenomes:BAE77578" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77578"
"EnsemblGenomes:BAE77577" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAE77577"
"EnsemblGenomes:BAC15292" "OBO:pr.owl" "http://www.ensemblgenomes.org/id/BAC15292"
"ENSEMBL:LRG_1173" "identifiers_org_registry:ensembl" "https://identifiers.org/ensembl:LRG_1173"