Test for Wellness KP does not produce results?

RTXteam / RTX

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

https://arax.ncats.io/

MIT License

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Test for Wellness KP does not produce results? #1800

Open edeutsch opened 2 years ago

edeutsch commented 2 years ago

Just as an experiment, I pulled a query designed to test the WellnessKP from the Expand test suite: https://github.com/RTXteam/RTX/blob/0ee1ceca464088737093ba9994928608e5b6998e/code/ARAX/test/test_ARAX_expand.py#L753 (very nice!)

and ran it interactively:

add_qnode(ids=UniProtKB:O00533, categories=biolink:Protein, key=n00)
add_qnode(categories=biolink:Protein, key=n01)
add_qedge(subject=n00, object=n01, key=e00)
expand(kp=infores:biothings-multiomics-wellness)

But did not get any results:

amykglen commented 2 years ago

thanks for writing this up! a lot of the multiomics KP tests started failing on us a while ago - we'll look into why