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RTXteam / RTX

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
https://arax.ncats.io/
MIT License
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Melanoma conflated with melanoma vaccine #2002

Closed amykglen closed 1 year ago

amykglen commented 1 year ago

https://arax.ncats.io/beta/?term=Melanoma

IDENTIFIER LABEL ORIGINAL LABEL CATEGORY
UMLS:C0796561 melanoma melanoma biolink:ChemicalEntity
ATC:L03AX12 melanoma vaccine melanoma vaccine biolink:ChemicalEntity
UMLS:C0025202 melanoma melanoma biolink:Disease
HP:0002861 Melanoma Melanoma biolink:PhenotypicFeature
LOINC:LA14279-6 Melanoma Melanoma biolink:Disease
MESH:D008545 Melanoma Melanoma biolink:Disease
NCIT:C3224 Melanoma Melanoma biolink:Disease
NCIT:C2517 Melanoma Vaccine Melanoma Vaccine biolink:Drug
OMIM:MTHU000127 Melanoma Melanoma biolink:NamedThing
PDQ:CDR0000038833 melanoma melanoma biolink:Disease
EFO:0000756 melanoma melanoma biolink:Disease
MONDO:0005105 melanoma melanoma biolink:Disease
DOID:1909 melanoma melanoma biolink:Disease
ttd.target:Melanoma_vaccine Melanoma vaccine Melanoma vaccine biolink:SmallMolecule
KEGG:05218 Melanoma Melanoma biolink:Pathway

(in KG2.8.0c)

amykglen commented 1 year ago

these no longer appear conflated in the latest version of the new synonymizer (#2003):

Cluster for NCIT:C2517 (UMLS:C0796561) has 4 nodes:

id category name in_SRI in_KG2pre is_cluster_rep
ATC:L03AX12 ChemicalEntity melanoma vaccine X
NCIT:C2517 Drug Melanoma Vaccine X
UMLS:C0796561 ChemicalEntity Melanoma vaccine X X X
ttd.target:Melanoma_vaccine SmallMolecule Melanoma vaccine X

Cluster for MONDO:0005105 has 17 nodes:

id category name in_SRI in_KG2pre is_cluster_rep
DOID:1909 Disease melanoma X X
EFO:0000756 Disease melanoma X X
HP:0002861 Disease Melanoma X X
KEGG.DISEASE:05218 Disease X
LOINC:LA14279-6 Disease Melanoma X
MEDDRA:10025650 Disease X
MEDDRA:10027150 Disease X
MEDDRA:10053571 Disease X
MESH:D008545 Disease Melanoma X X
MONDO:0005105 Disease melanoma X X X
NCIT:C3224 Disease Melanoma X X
ORPHANET:411533 Disease X
PDQ:CDR0000038833 Disease melanoma X
SNOMEDCT:1162635006 Disease X
SNOMEDCT:372244006 Disease X
UMLS:C0025202 Disease melanoma X X
UMLS:CN971653 Disease X
amykglen commented 1 year ago

fixed on test! https://arax.ncats.io/test/?term=Melanoma