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RTXteam / RTX

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
https://arax.ncats.io/
MIT License
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ARAX suddenly returning zero results for Test Case 21 #2396

Closed isbluis closed 1 month ago

isbluis commented 1 month ago

The latest CI testing results show that ARAX returns zero results for the query in Test Case 21.

You can see that in previous runs of the same query, ARAX did return results.

isbluis commented 1 month ago

In case this helps as a clue, the response also reports a non-zero total_results_count

image

amykglen commented 1 month ago

this appears to be fixed on CI now (after the fix to Plover in #2397) - good to close?

https://arax.ci.transltr.io/?r=309958

isbluis commented 1 month ago

Excellent, thank you!

isbluis commented 1 month ago

Not sure if this is directly related to this issue, but I notice that some publications have Amazon S3 URLs -- is this expected? image

amykglen commented 1 month ago

interesting, good question - that's unrelated to this issue, and from what I can tell so far it looks like those are coming from other KPs. for instance, node CHEBI:187893 is one with such s3 urls (in the JSON response here), and in KG2 its publications property only includes PMIDs (in neo4j and as returned from Plover - see this response).

whoever it is that's providing those doesn't appear to fill out the attribute_source, so I don't know who it is, but we could track it down. would that be good to do?

isbluis commented 1 month ago

Looks like it is coming from MolePro. I'll open an issue for them. Thanks!