`File exists` error

[mmikhasenko]

File exists error appears when running pixi run doc on Lb2pKgbranch.

Something simple, I'm sure. The error message is very uninformative. First thought is a conflict of Lb2pKg and Lc2pKpi files somehow.

zsh> git clean -f
Removing .DS_Store
Removing docs/.DS_Store
Removing docs/julia/.DS_Store
Removing docs/julia/Lb2pKg_files/.DS_Store
Removing docs/julia/Lb2pKg_files/execute-results/.DS_Store
zsh>  pixi run doc                     
✨ Pixi task (install-julia in default): juliaup add 1.10.3 && juliaup default 1.10.3 && julia --project -e '
    using Pkg
    Pkg.add("IJulia")
    import IJulia
    IJulia.installkernel("julia-amplitude-serialization")
'

'1.10.3' is already installed.
Configured the default Julia version to be '1.10.3'.
    Updating registry at `~/.julia/registries/General.toml`
   Resolving package versions...
  No Changes to `~/.julia/environments/v1.10/Project.toml`
  No Changes to `~/.julia/environments/v1.10/Manifest.toml`
[ Info: Installing julia-amplitude-serialization kernelspec in /Library/Jupyter/kernels/julia-amplitude-serialization-1.10

✨ Pixi task (doc in default): quarto render
[1/6] HS3.md
[2/6] python/lc2pkpi.qmd

Starting python3 kernel...(Notebook read from cache)

[3/6] description.md
[4/6] index.md
[5/6] julia/lc2pkpi.qmd

Starting julia-amplitude-serialization-1.10 kernel...Done

Executing 'lc2pkpi.ipynb'
  Cell 1/8: ''...Done
  Cell 2/8: ''...Done
  Cell 3/8: ''...Done
  Cell 4/8: ''...Done
  Cell 5/8: ''...Done
  Cell 6/8: ''...Done
  Cell 7/8: ''...Done
  Cell 8/8: ''...Done

[Errno 17] File exists: '/AmplitudeModelSerialization/docs/julia/.jupyter_cache/executed/8b6f7c9fbb6beb9d814edc9f489a4490'

[redeboer]

I had a similar problem like this before. Quick solution is just to clean all git-ignored files

git clean -Xdf

The 'correct' way would be to clean with jupyter-cache directly, but it seems not to be available in the Pixi environment (I'm not sure why though — it is used by quarto somehow).

[mmikhasenko]

I had a similar problem like this before. Quick solution is just to clean all git-ignored files

git clean -Xdf

The 'correct' way would be to clean with jupyter-cache directly, but it seems not to be available in the Pixi environment (I'm not sure why though — it is used by quarto somehow).

Solves the problem! Let's add the solution to the readme and close the issue for now

[redeboer]

Let's add the solution to the readme and close the issue for now

Could be done, but I'm not entirely sure what caused the problem in your case. What I described is more of a general tip for using repositories that have reproducible environments: just clean all the build files (git clean), checkout the branch of interest, recreate the environment (pixi does this automatically), and run. Almost like starting a new container like GitHub Actions does.