Problem creating environment and Error executing process 'spades (1)'

[vicho33]

Hello! I'm new working with nextflow and muffin, and I have a problem running the test run, its show the next problem:

bioinfo@bioinfo:~/programas_analisis_bio$ ./nextflow run RVanDamme/MUFFIN --output results_dir --cpus 30 --memory 200g -profile local,conda,test NOTE: Nextflow is not tested with Java 1.8.0_241 -- It's recommended the use of version 11 up to 18

N E X T F L O W ~ version 22.04.3 Launching https://github.com/RVanDamme/MUFFIN [reverent_thompson] DSL2 - revision: 939ff8ca71 [master] executor > local (1) executor > local (1) executor > local (2) executor > local (5) [ae/e82605] process > test [100%] 1 of 1 ✔ executor > local (5) [ae/e82605] process > test [100%] 1 of 1 ✔ [skipped ] process > sourmash_download_db [100%] 1 of 1, stored: 1 ✔ [skipped ] process > checkm_download_db [100%] 1 of 1, stored: 1 ✔ [- ] process > checkm_setup_db - [b8/ff6a75] process > discard_short (1) [100%] 1 of 1 ✔ [59/04f99a] process > merge (1) [100%] 1 of 1 ✔ [6c/49f21e] process > fastp [100%] 1 of 1 ✔ [- ] process > spades - [- ] process > minimap2 - [- ] process > bwa - [- ] process > metabat2 - [- ] process > maxbin2 - [- ] process > concoct - [- ] process > refine3 - [- ] process > checkm - [- ] process > sourmash_bins - [- ] process > sourmash_checkm_parser - [- ] process > eggnog_download_db - [- ] process > eggnog_bin - [- ] process > parser_bin - [22/416aa3] process > readme_output [100%] 1 of 1 ✔ Creating env using conda: bioconda::spades=3.15.4 [cache /home/bioinfo/programas_analisis_bio/work/conda/env-2764ad39cfdcaa70f654d99e2e0c6c06] Error executing process > 'spades (1)'

Caused by: Failed to create Conda environment command: conda create --mkdir --yes --quiet --prefix /home/bioinfo/programas_analisis_bio/work/conda/env-2764ad39cfdcaa70f654d99e2e0c6c06 bioconda::spades=3.15.4 status : 1 message: PackagesNotFoundError: The following packages are not available from current channels:

  - openmp

Current channels:

  - https://repo.anaconda.com/pkgs/main/linux-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

bioinfo@bioinfo:~/programas_analisis_bio$ conda create --mkdir --yes --quiet --prefix /home/bioinfo/programas_analisis_bio/work/conda/env-2764ad39cfdcaa70f654d99e2e0c6c06 bioconda::spades=3.15.4 Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

PackagesNotFoundError: The following packages are not available from current channels:

• openmp

Current channels:

• https://repo.anaconda.com/pkgs/main/linux-64
• https://repo.anaconda.com/pkgs/main/noarch
• https://repo.anaconda.com/pkgs/r/linux-64
• https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

I hope you can help, Thank you!!