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RVanDamme / MUFFIN

hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
https://rvandamme.github.io/MUFFIN_Documentation/#introduction
GNU General Public License v3.0
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`checkm_setup_db` steps appears unusually long #9

Closed RemiMaglione closed 4 years ago

RemiMaglione commented 4 years ago

Hello, checkm_setup_db steps appears unusually long (I checked the code of both checkmgetdatabases.nfand checkmsetupDB.nf and it looks like a download and installation of the checkm database: it should not took more than 2 hours, or should it ?) So I kill the main command and manually launch the checkmgetdatabases with nextflow run checkmgetdatabases.nf and now the pipeline moved to the fastp step. Thanks for your help

Originally posted by @RemiMaglione in https://github.com/RVanDamme/MUFFIN/issues/7#issuecomment-613645526

RVanDamme commented 4 years ago

Hello @RemiMaglione, The version 1.0.0 of MUFFIN just got released. This should solve most of the issue you faced while trying the pre-release. If you face issue identical to the one reported here or new issue please feel free to open new issues and report them to us. I will close this issue for now.