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RWilton / Arioc

Arioc: GPU-accelerated DNA short-read alignment
BSD 3-Clause "New" or "Revised" License
55 stars 8 forks source link

No Source Code Available? #1

Closed bpfeffer closed 8 years ago

bpfeffer commented 9 years ago

I'm having an issue compiling on centos because my glibc is 2.12 and it requires 2.14 in the precompiled version. So I went to download the source code and all 3 versions(both zips per) don't have the source code and only have a manual and some attribute files.

Am I missing something or do you have an idea on how to run despite the wrong glibc version?

RWilton commented 9 years ago

Hello --

The Arioc sources are in Arioc.104.zip (about 720KB), under "Releases".

As for getting the precompiled binaries to run with an earlier version of glibc: please don't bother. It's easier to recompile from source.

If that doesn't work for you, please let me know.

Richard Wilton

From: bpfeffer [mailto:notifications@github.com] Sent: Monday, March 09, 2015 15:50 To: RWilton/Arioc Subject: [Arioc] No Source Code Available? (#1)

I'm having an issue compiling on centos because my glibc is 2.12 and it requires 2.14 in the precompiled version. So I went to download the source code and all 3 versions(both zips per) don't have the source code and only have a manual and some attribute files.

Am I missing something or do you have an idea on how to run despite the wrong glibc version?

— Reply to this email directly or view it on GitHubhttps://github.com/RWilton/Arioc/issues/1.

bpfeffer commented 9 years ago

I installed a second copy of glibc(2.14) in /opt/newglibc and then when I run the program, I use the commandline: LD_LIBRARY_PATH=/opt/newglibc ./AriocE And it uses the newer library for that execution, software is working now.

RWilton commented 9 years ago

Thank you for the tip on getting the precompiled Arioc binaries to run.

If you have a moment, I would be grateful if you could send me a bit of performance data with your setup. A dump of the output from AriocU or AriocP (plus a few tidbits like CPU clock speed and disk I/O bandwidth) ought to contain enough information.

Good luck!

From: bpfeffer [mailto:notifications@github.com] Sent: Monday, March 09, 2015 16:46 To: RWilton/Arioc Cc: RWilton Subject: Re: [Arioc] No Source Code Available? (#1)

I installed a second copy of glibc(2.14) in /opt/newglibc and then when I run the program, I use the commandline: LD_LIBRARY_PATH=/opt/newglibc ./AriocE And it uses the newer library for that execution, software is working now.

— Reply to this email directly or view it on GitHubhttps://github.com/RWilton/Arioc/issues/1#issuecomment-77938588.