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RWilton / Arioc

Arioc: GPU-accelerated DNA short-read alignment
BSD 3-Clause "New" or "Revised" License
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Error when running AriocP #28

Closed wabrashear closed 1 year ago

wabrashear commented 1 year ago

I'm trying to get Arioc working with the the example data for GRCh38. I'm getting this error when running AriocP for the paired end data using the provided cfg file:

ApplicationException ([0x03680784] AriocCommon/InputFileGroup.cpp 612): inconsistent value for attribute srcId= for ../../Q/G RCh38/enc.paired/i100p_1$a21.sbf: expected 1 specified 0

RWilton commented 1 year ago

The error indicates that srcId="1" was specified in the AriocE configuration file for the encoded reads whereas srcId="0" was specified where those encoded reads were referenced in the AriocP configuration file. The value for the srcId attribute must be the same in both places.

If that doesn't help you resolve the problem, then please feel free to post or email your .cfg files and we'll try to help you figure it out.

wabrashear commented 1 year ago

That worked. Thank you!