empty .fa.gz files when running "extract"

RabadanLab / arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

GNU General Public License v3.0

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empty .fa.gz files when running "extract" #110

Closed Tinocapo closed 1 year ago

Tinocapo commented 1 year ago

The pipeline worked well with the test.bam file, but if I try to run it on any other bam file, "extract" creates empty .fa.gz files. "extract" only works if I use the option --single, but my data isn't single-ended.

blain1995 commented 7 months ago

@Tinocapo I am also having the same issue, did you find a solution?