When running "arcas genotype fastq1 fastq2" I consistently get the error that there is no such file or directory for hla_nom_p.txt. Specifically " No such file or directory: 'Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/../dat/IMGTHLA/wmda/hla_nom_p.txt' "
Similarly when I try to update the HLA file: using "arcasHLA reference --update ", I get the same error
Specifically, the full output is:
arcasHLA reference --update
Traceback (most recent call last):
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 568, in
build_convert(False)
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 482, in build_convert
p_group = process_hla_nom(hla_nom_p)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 236, in process_hla_nom
for line in open(hla_nom, 'r', encoding='UTF-8'):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
When running "arcas genotype fastq1 fastq2" I consistently get the error that there is no such file or directory for hla_nom_p.txt. Specifically " No such file or directory: 'Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/../dat/IMGTHLA/wmda/hla_nom_p.txt' "
Similarly when I try to update the HLA file: using "arcasHLA reference --update ", I get the same error
Specifically, the full output is:
arcasHLA reference --update Traceback (most recent call last): File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 568, in build_convert(False) File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 482, in build_convert p_group = process_hla_nom(hla_nom_p) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 236, in process_hla_nom for line in open(hla_nom, 'r', encoding='UTF-8'): ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^