samtools and kallisto versions not found

RabadanLab / arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

GNU General Public License v3.0

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Open arusa opened 2 weeks ago

arusa commented 2 weeks ago

When running conda env create -f environment.yml I got this error:

Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:
  - samtools==1.19.2
  - kallisto==0.44.0

After changing the versions to "1.20" and "0.51.0" it worked again.

It seems that bioconda doesn't keep older versions of packages?

arusa commented 2 weeks ago

Ok, that didn't work, because later I get the error:

    Deprecated: `kallisto pseudo` is deprecated. See `kallisto bus`.

arusa commented 2 weeks ago

I found the problem. 0.51.0 is the first version of kallisto that exists for osx-arm64 (Apple Silicon).