RabadanLab / arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq
GNU General Public License v3.0
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new version of kallisto outputs have changed #138

Open katahdin0 opened 2 months ago

katahdin0 commented 2 months ago

unfortunately they seem to have removed various options and changed the output formats, to get to the transcripts/alignments file it seems like some more steps are needed. maybe additional code is needed here to get the output be compatible ? or else some detailed instructions. A lot of searching resulted in some complex prescriptions, at which point I gave up