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RabadanLab / arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq
GNU General Public License v3.0
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Allow file names with "." in the name #68

Closed jen-dfci closed 2 years ago

jen-dfci commented 3 years ago

We would like to process samples with arcasHLA, but need to use file names with a "." which causes an error. Example file names include "AABGIOKSQ.01". Would you be able to update arcasHLA's code to handle these filenames?

jen-dfci commented 3 years ago

Please see pull request submitted 7/19/21

tpereachamblee commented 2 years ago

Thank you for using our tool. You're correct, arcasHLA presently does not support filenames with "." appearing before the file extension. This a reasonable convention to adhere to since, typically, we regard everything after the first "." as a file's extension (consider multi-part extensions such as ".tar.gz"). That said, we may update this in a future release.