Closed Rohit-Satyam closed 8 months ago
rabbit_qc
ran fine on all samples on which RabbitQCPlus
failed. So it's not the files with fault.
Hi! Can you provide the data? Thanks!
Kindly provide your email ID.
OK! lifeng.yan@mail.sdu.edu.cn
You should have received an email from rohit.satyam@kaust.edu.sa
Hi @ZekunYin @yanlifeng @LeiHaoa @XiaomingXu1995
I was trying to use
RabbitQCPlus
as a part of nextflow automated pipeline, but I am observing some issues. The tool runs just fine on the raw fastq files but when I perform adapter trimming usingporechop_abi
it runs fine on few samples but fails for the othersCan you help me with this? I can even share the sample should you like to look into it. PS: I am running this on workstation and the data is small 75MB so memory shouldn't be an issue. The data before trimming was around 100MB and the tool ran fine. Post trimming only sample with 5MB size ran successfully.