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RabbitBio / RabbitTClust

RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
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Output Format #5

Open amyliufda opened 1 year ago

amyliufda commented 1 year ago

Is it possible for a future release to generate the Newick tree format? Thanks!

XiaomingXu1995 commented 1 year ago

Hi amyliufda,

Thank you for this issue! I'm looking into it, and I will let you know when the new version is released.

Best, Xiaoming

XiaomingXu1995 commented 1 year ago

Hi amyliufda, In the latest version of RabbitTClust (v.2.2.1), I have introduced a new option called --newick-tree which enables the generation of a Newick tree format output file. The output file will have a suffix name of ".newick.tree". You can build the latest version from the source code.

I would appreciate it if you could provide feedback on how this feature works for you.

Best, Xiaoming

amyliufda commented 1 year ago

Hi Xiaoming,

Thank you very much for the quick turnaround of this new feature, we really appreciate it. Yes, we plan to test it this week, and will let you know how it goes.

Best, Amy