Fix CI issues with URLs starting with "git"

[bhazelton]

Description

Fix urls in pre-commit and conda yamls to use https rather than git

Also updated the pre-commit package versions.

Motivation and Context

GitHub no longer allows URLs starting with "git" rather than "ssh" or "https".

Types of changes

• [ ] Bug fix (non-breaking change which fixes an issue)
• [ ] New feature (non-breaking change which adds functionality)
• [ ] Breaking change (fix or feature that would cause existing functionality to change)
• [ ] Reference simulation update or replacement
• [ ] Documentation change (documentation changes only)
• [ ] Version change
• [x] Build or continuous integration change

Checklist:

For all pull requests:

• [x] I have read the contribution guide.
• [x] My code follows the code style of this project.

Build or continuous integration change checklist:

• [ ] If required or optional dependencies have changed (including version numbers), I have updated the readme to reflect this.
• [ ] If this is a new CI setup, I have added the associated badge to the readme and to references/make_index.py (if appropriate).

[codecov[bot]]

Codecov Report

Merging #392 (ce70893) into main (2193fd3) will increase coverage by 22.77%. The diff coverage is n/a.

@@             Coverage Diff             @@
##             main     #392       +/-   ##
===========================================
+ Coverage   76.55%   99.33%   +22.77%     
===========================================
  Files          13       13               
  Lines        2094     2094               
===========================================
+ Hits         1603     2080      +477     
+ Misses        491       14      -477     

Impacted Files	Coverage Δ
pyuvsim/telescope.py	100.00% <0.00%> (+4.84%)	:arrow_up:
pyuvsim/astropy_interface.py	100.00% <0.00%> (+7.14%)	:arrow_up:
pyuvsim/simsetup.py	99.89% <0.00%> (+8.78%)	:arrow_up:
pyuvsim/utils.py	98.11% <0.00%> (+25.78%)	:arrow_up:
pyuvsim/uvsim.py	99.42% <0.00%> (+38.39%)	:arrow_up:
pyuvsim/profiling.py	97.72% <0.00%> (+56.81%)	:arrow_up:
pyuvsim/mpi.py	100.00% <0.00%> (+95.33%)	:arrow_up:

---

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 2193fd3...ce70893. Read the comment docs.

[bhazelton]

The hera_sim tests fail because there are multiple HERA packages that have URLs in their requirements that start with "git://". I initially thought it was caused by those kind of URLs in hera_sim's setup.cfg, which are a problem but are not actually causing these test failures because we use the --no-deps flag when installing hera_sim. Looks like it's caused by hera_cal and probably other packages with those kinds of dependencies.

I made an issue about that here: https://github.com/HERA-Team/hera_sim/issues/219

I made an issue for this on hera_cal here: https://github.com/HERA-Team/hera_cal/issues/766

[bhazelton]

The project level coverage drop will be fixed in #387